| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,093,298 – 6,093,415 |
| Length | 117 |
| Max. P | 0.701539 |
| Location | 6,093,298 – 6,093,415 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.43 |
| Mean single sequence MFE | -23.34 |
| Consensus MFE | -21.29 |
| Energy contribution | -21.97 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.701539 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6093298 117 - 27905053 GAAACUGAGCAAGAGUCUUACGCCAGAAUUCAGUAAAUUGGGAUUCGAUAAGGACAACCCUUUUGUCUUAUCGAAAUGUAACCGAUUUUACCUUUUCAUCUACAAAAAAC---ACAUACA (((((((.((...........)))))......(((((((((..(((((((((.((((.....)))))))))))))......)))).)))))..)))).............---....... ( -22.70) >DroSec_CAF1 5351 113 - 1 GAAACUGAGCAAGAGUCUUACGCCACAGCUCAGUAAAUUGGGAUUCAAUAAGGACAACCCUUUUGUCUUAUCGAAAUGCAACCGAUUUUACCUUUUCAUCUACAAAAAAC---ACA---- ((((((((((....((.....))....)))))))(((((((..(((.(((((.((((.....))))))))).)))......)))))))......))).............---...---- ( -21.20) >DroSim_CAF1 5342 113 - 1 GAAACUGAGCAAGAGUCUUACGCCACAGCUCAGUAAAUUGGGAUUCGAUAAGGACAACCCUUUUGUCUUAUCGAAAUGCAACCGUUUUUACCUUUUCAUCUACAAAAAAC---ACA---- ...(((((((....((.....))....)))))))...(((.(.(((((((((.((((.....))))))))))))).).)))..((((((...............))))))---...---- ( -25.36) >DroEre_CAF1 5350 120 - 1 GAAACUGAGCAAGAGUCUUGGGCCACAACUCAGUAAAUUGGGAUACGAUAAGCACGAGUCUUUUGUCUUAUCGAAAUGCAUCCAAUUUUUUAUGUUCAUCUCAAAAAGGCAAGUAAUUAA ((...((((((((((..(((((......(((((....)))))...(((((((.(((((...)))))))))))).......)))))..)))).))))))..)).................. ( -24.10) >consensus GAAACUGAGCAAGAGUCUUACGCCACAACUCAGUAAAUUGGGAUUCGAUAAGGACAACCCUUUUGUCUUAUCGAAAUGCAACCGAUUUUACCUUUUCAUCUACAAAAAAC___ACA____ ((((((((((....((.....))....)))))))(((((((..(((((((((.((((.....)))))))))))))......)))))))......)))....................... (-21.29 = -21.97 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:09 2006