Locus 2128

Sequence ID 3R_DroMel_CAF1
Location 6,091,236 – 6,091,326
Length 90
Max. P 0.745031
window3477

overview

Window 7

Location 6,091,236 – 6,091,326
Length 90
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 65.92
Mean single sequence MFE -18.07
Consensus MFE -9.75
Energy contribution -9.53
Covariance contribution -0.22
Combinations/Pair 1.17
Mean z-score -1.51
Structure conservation index 0.54
SVM decision value 0.46
SVM RNA-class probability 0.745031
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6091236 90 - 27905053
AC---------UUAACGAAUAUGAUUUAUACCAAAAUAAAGUC-------UUUUAA-UUUAAAUUGAUAAAUUUCUUCUUGUGUAAGUGCGCCGCCACCGGCGUCCC
((---------(((((((....(((((((..(((..((((...-------......-))))..)))))))))).....)))).)))))((((((....))))))... ( -15.30)
>DroEre_CAF1 3161 107 - 1
UCUCAACGAUUUUGACAAAUACAACUUACACCUAAUUAAAAUCGUCGAUAUUUAAAGCUAAAAUGUAUGAAUUUCUUUUUGUGUAAUUGCGCCGCCACCGGCGCCUC
..((((.....))))..........((((((..((..(((.((((..((((((.......)))))))))).)))..))..))))))..((((((....))))))... ( -19.50)
>DroYak_CAF1 3258 90 - 1
GCGCAAUGAUUUAGAC--AUACAAUUUAAACCUUA---------------UUUAAAAUAUAAAUUGAUUCAUUUCUUUUUGUGUAAUUGCGCCGCCGCCGGCGUCUC
(((((((.........--......((((((.....---------------))))))(((((((..((......))..))))))).)))))))((((...)))).... ( -19.40)
>consensus
AC_CAA_GAUUUUGAC_AAUACAAUUUAAACCUAA_UAAA_UC_______UUUAAA_UUUAAAUUGAUAAAUUUCUUUUUGUGUAAUUGCGCCGCCACCGGCGUCUC
........................................................................................((((((....))))))... ( -9.75 =  -9.53 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:08 2006