Locus 2125

Sequence ID 3R_DroMel_CAF1
Location 6,071,220 – 6,071,329
Length 109
Max. P 0.647313
window3471

overview

Window 1

Location 6,071,220 – 6,071,329
Length 109
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 79.56
Mean single sequence MFE -33.77
Consensus MFE -19.92
Energy contribution -20.70
Covariance contribution 0.78
Combinations/Pair 1.17
Mean z-score -1.74
Structure conservation index 0.59
SVM decision value 0.24
SVM RNA-class probability 0.647313
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6071220 109 - 27905053
-------UGCUGACCUGUGGCGCUCCCUCAUCGCUUCCAGCAACUUGAGACUGUUCUCGCUCAGCUGUUUCUCCAACGCCAGGACACGCUGCUCCAGCUGUCCUUCGGCUUCCUGU
-------.(((((....((((((.........))...((((....(((((....)))))....))))..........))))(((((.((((...))))))))).)))))....... ( -32.70)
>DroPse_CAF1 74287 106 - 1
CGGCCGCCGCUGACUUCU------CGCGCAUGGCUUCCAGCAACUUGAGACUGUUCUCGCUCAGCUGCUUCUCCAGGGCCAGGACACGCUGCUCCAGCUGGCCUUCGGC---CAG-
.((((((.(((((.....------.((((.(((...))))).....((((....))))))))))).))......((((((((....)((((...))))))))))).)))---)..- ( -39.00)
>DroSec_CAF1 71496 109 - 1
-------UGCUGACCGUUGGCGCUCCCUCAUCGCUUCCAGCAACUUUAGACUGUUCUCGCUCAGCUGUUUCUCCAACGCCAGGACACGCUGCUCCAGCUGUCCUUCGGCUUCCAGU
-------.((((...(((((.(..........((.....)).....(((.(((........))))))...).)))))(((((((((.((((...))))))))))..)))...)))) ( -31.40)
>DroEre_CAF1 74048 109 - 1
-------CGCUGACCUCUGGCGCUCCCUCAUCGCUUCCAGCAGCUUGAGACUGUUCUCACUCAGCUGCUUCUCCAAUGCCAGGACACGCUGCUCCAGCUGUCCCUCGGCUUCCAGU
-------.(((((....((((((.........))....((((((((((((....)))))...)))))))........))))(((((.((((...))))))))).)))))....... ( -38.20)
>DroYak_CAF1 74620 109 - 1
-------UGCUGACCUUUGGCGCUCCCUCAUCGCUUCCAGCAACUUGAGACUGUUCUCGCUCAGCUGCUUCUCCAAUGCGAGGACACGCUGCUCCAGCUGUCCUUCGGCUUCCAGU
-------.((((.....(((.((...((((..((.....))....))))..(((((((((.................)))))))))....)).)))((((.....))))...)))) ( -30.23)
>DroMoj_CAF1 90688 104 - 1
CUC----CUGUUGCUUUUCCUUUUCGCGAACAGCUUCCAGCAGUUUGAGGCUGUUUUCGCUCAGCUGCUUCUCCAGGGCCAGAACACGCUGUUCCAGCUGAGCCUCCG--------
...----..................(.((((((((((.........)))))))))).)((((((((((((.....))))..((((.....)))).)))))))).....-------- ( -31.10)
>consensus
_______CGCUGACCUUUGGCGCUCCCUCAUCGCUUCCAGCAACUUGAGACUGUUCUCGCUCAGCUGCUUCUCCAACGCCAGGACACGCUGCUCCAGCUGUCCUUCGGCUUCCAGU
........(((((........................((((....(((((....)))))....))))..............(((((.((((...))))))))).)))))....... (-19.92 = -20.70 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:02 2006