Locus 2123

Sequence ID 3R_DroMel_CAF1
Location 6,069,817 – 6,069,922
Length 105
Max. P 0.783643
window3469

overview

Window 9

Location 6,069,817 – 6,069,922
Length 105
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 82.07
Mean single sequence MFE -21.90
Consensus MFE -6.56
Energy contribution -7.68
Covariance contribution 1.12
Combinations/Pair 1.11
Mean z-score -2.80
Structure conservation index 0.30
SVM decision value 0.57
SVM RNA-class probability 0.783643
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6069817 105 + 27905053
AAAAGUGAGGAGAUGAUUGAAAAAGAAACCUCUUCGAAUCCGAAAGAGGAUUCACACGAAUCGGAAGCCGCUACAAAUAAAAAGGUGGAAGGCAAUCGCGAGCUU
..((((((((((....((....)).....))))))((((((......)))))).......(((((.(((.((((..........))))..)))..)).))))))) ( -26.00)
>DroSec_CAF1 69981 102 + 1
AAAAGUGAAGAGAUAAUUGAAAACGACACCUCU---AAGCCGAAAGAGGAUUCACAAGAAUCGAAAACUGCCACAAAUAAAAAGGUGGAAGCUAAUCGAAAGCUU
....(((((.......(((....)))..(((((---........))))).)))))(((..((((...((.((((..........)))).))....))))...))) ( -18.60)
>DroSim_CAF1 71456 102 + 1
AAAAGUGAGGAGAUGAUUGAAAAAGAAACCUCU---AAGCCGAAAGAGGAUUCACAAGAAUCGAAAACUGCUACUAAUAAAAAGGUGGAAGCUAAUCGAAAGCUU
...(((.....(((..(((.....(((.(((((---........))))).))).)))..)))....))).(((((........)))))(((((.......))))) ( -19.00)
>DroEre_CAF1 72651 96 + 1
AAAAGUGAAGAGCGCAUUGGAAAAGAAACCUCC---AAGUCGAAAGAGGAUUCACA------GGAAACUGAUUCAACUAAAAAGGUGGAAACCAAUCCAAAGCUU
.........((((...(((((...(((.((((.---.........)))).))).((------(....))).............(((....)))..))))).)))) ( -25.30)
>DroYak_CAF1 73187 102 + 1
AAAAGUGAAGAGAGUGUUGAAAAACAAACCUCU---GAGUCAAAAGAUGAUUCACAAGAAUUGGAAACUUCAACAACUAAAAAGGUGGAAUCCAAUCGAAAGCUU
..((((..((((..((((....))))...))))---((((((.....))))))....((.(((((...(((....(((.....))).))))))))))....)))) ( -20.60)
>consensus
AAAAGUGAAGAGAUGAUUGAAAAAGAAACCUCU___AAGCCGAAAGAGGAUUCACAAGAAUCGGAAACUGCUACAAAUAAAAAGGUGGAAGCCAAUCGAAAGCUU
..((((...((.............(((.(((((...........))))).)))..............(((((...........))))).......))....)))) ( -6.56 =  -7.68 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:00 2006