Locus 2122

Sequence ID 3R_DroMel_CAF1
Location 6,068,228 – 6,068,342
Length 114
Max. P 0.644202
window3468

overview

Window 8

Location 6,068,228 – 6,068,342
Length 114
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 76.40
Mean single sequence MFE -40.19
Consensus MFE -23.69
Energy contribution -23.03
Covariance contribution -0.66
Combinations/Pair 1.36
Mean z-score -1.51
Structure conservation index 0.59
SVM decision value 0.23
SVM RNA-class probability 0.644202
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6068228 114 - 27905053
UUGGAGCCCAAGAUUUGGGUCUCUGCCGCUCCAAGCUCGUCUCCCUGGAACCGGCCAAUUGCUU---CUGCUCCUUGAGCUUGCGUGCUAGUUUAGCCUUCUGCUUGGGACUCUUCU
..((((((((((....((((..(((.(((..((((((((......(((......)))...((..---..))....)))))))).))).)))....))))....)))))).))))... ( -38.20)
>DroPse_CAF1 71012 117 - 1
UGGGAGCCCAGGACUUUGGUCUCUGGCGCUCCAAGCUCGCCUCUCGGGACCCCGUCAACAGCUGCGGCUUCUCCUUUAGCUUGCGCGCCAGUCUCGCCUUUUGCUUGGGACUUUUCU
.(((((((((((.....(((..(((((((..((((((........((((..((((........))))..))))....)))))).)))))))....))).....)))))).))))).. ( -44.30)
>DroSim_CAF1 69868 114 - 1
UUGGAGCCCAAGAUUUGGGUCUCUGCCGCUCCAAGCUCGUGUCCCUGGAACCGGCCAACUGCUU---CUGCUCCUUGAGCUUGCGUGCUAGCUUGGCCUUCUGCUUGGGACUCUUCU
..((((((((((....(((((...((.((.(((((((((.......((((.(((....))).))---))......)))))))).).))..))..)))))....)))))).))))... ( -42.82)
>DroWil_CAF1 76187 114 - 1
CUGGUGCCCAGGAUUUCGGUCGUUGACGCUCUGCGCUGGACUCCCGAGACCC---CAAAUGCUGACUCUUCUCUUUGAGCUUACGUGCCACCUUCGCCUUACGCUUGGGGCUUUUUU
.(((..(...((.((((((..(((.((((...))).).)))..)))))).))---..........(((........))).....)..))).....((((((....))))))...... ( -30.50)
>DroMoj_CAF1 87661 114 - 1
UAGGCGCCCAGGACUUGGGUCUCCUGCGCUCCAGGCUAGGCUCUCGUGAUACAGCCAGCUUGGG---CUUCUCUUUCAGUUUGCGUGCCAGCUUCGCCUUGCGCCUGGGACUCUGCU
((((..((((((....((((...((((((.(((((((.((((..........)))))))))))(---(..((.....))...))))).)))....))))....))))))..)))).. ( -41.70)
>DroPer_CAF1 67660 117 - 1
UGGGAGCCCAGGACUUUGGUCUCUGGCGCUCCAAGCUCGCCUCUCGGGACCCCGUCAACAGCUGCGGCUUCUCCUUUAGCUUGCGCGCCAGCCUCGCCUUUUGCUUGGGACUUUUCU
.(((((((((((.....(((..(((((((..((((((........((((..((((........))))..))))....)))))).)))))))....))).....)))))).))))).. ( -43.60)
>consensus
UUGGAGCCCAGGACUUGGGUCUCUGGCGCUCCAAGCUCGCCUCCCGGGACCCCGCCAACUGCUG___CUUCUCCUUGAGCUUGCGUGCCAGCUUCGCCUUCUGCUUGGGACUCUUCU
..((((((((((.....(((..(((.(((..((((((........................................)))))).))).)))....))).....)))))).))))... (-23.69 = -23.03 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:57 2006