Locus 2121

Sequence ID 3R_DroMel_CAF1
Location 6,065,501 – 6,065,592
Length 91
Max. P 0.500000
window3467

overview

Window 7

Location 6,065,501 – 6,065,592
Length 91
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 72.43
Mean single sequence MFE -46.37
Consensus MFE -21.45
Energy contribution -24.40
Covariance contribution 2.95
Combinations/Pair 1.23
Mean z-score -1.65
Structure conservation index 0.46
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6065501 91 - 27905053
UCAUCGUCGGCAGCGGCGGUGGC------------GGAGGGGGCGUGUCCGGAUCCGGAGGCAGUGGGGCUGGUCCCGUGGCCUC---CGCCAUUGCGGGUCAGCA
.....((.(((..(.((((((((------------(((((..((((.((((....)))).))...((((....))))))..))))---))))))))).)))).)). ( -49.80)
>DroSec_CAF1 65675 91 - 1
UCAUCGUCGGCAGCGGCGGAGGC------------GGAGGGAGCGUGUCCGGAUCCGGAGGCGGUGGGGCUGGUCCCGUGGCCUC---CGCCAUUGCGGGUCAGCA
.....(((.((((.(((((((((------------.(.((((.(((.((((....)))).))((.....))).)))).).)))))---)))).)))).)).).... ( -48.70)
>DroSim_CAF1 67155 91 - 1
UCAUCGUCGGCAGCGGCGGAGGC------------GGAGGGAGCGUGUCCGGAUCCGGAGGCGGUGGGGCUGGUCCCGUGGCCUC---CGCCAUUGCGGGUCAGCA
.....(((.((((.(((((((((------------.(.((((.(((.((((....)))).))((.....))).)))).).)))))---)))).)))).)).).... ( -48.70)
>DroYak_CAF1 68528 103 - 1
UCAUCGUCGGCAGCGGCGGAGGCUGAGGCUGAGGCGGAUGGGGCGUGGCCGGAUCCGGAGGCGGUGGGGCUGGUCCCGUGGCCUC---CGCCAUUGCGGGUCAGCA
.....(((.((((.((((((((((...((....))..(((((((.(((((....(((....)))...))))))))))))))))))---)))).)))).)).).... ( -51.70)
>DroAna_CAF1 58990 82 - 1
UCAUCGUCGGUGGCU---------------------UGGCCUGUGCCUCCGGCAGUGGGGGCAGUGGGGGUGCUCCCGGGUCCUC---CGCCAUUGCGGGUCAGCA
.(((.....)))(((---------------------.((((((((((((((....))))))).(((((((.(((....)))))))---)))....)))))))))). ( -40.50)
>DroPer_CAF1 64914 76 - 1
UCCUCAUCGCUGGCGACUGCAGC------------GG------------------CGGUGGUGCUGGAGCUGCUUUCGUGGCCUCCACCGCCAUUGCGUGUCAGCA
........(((((((...((((.------------((------------------((((((....((.((..(....)..)))))))))))).)))).))))))). ( -38.80)
>consensus
UCAUCGUCGGCAGCGGCGGAGGC____________GGAGGGAGCGUGUCCGGAUCCGGAGGCGGUGGGGCUGGUCCCGUGGCCUC___CGCCAUUGCGGGUCAGCA
...((((((....))))))........................(((.((((....)))).))).....(((((.((((((((.......)))...)))))))))). (-21.45 = -24.40 +   2.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:56 2006