Locus 2116

Sequence ID 3R_DroMel_CAF1
Location 6,042,135 – 6,042,235
Length 100
Max. P 0.782316
window3458

overview

Window 8

Location 6,042,135 – 6,042,235
Length 100
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 83.09
Mean single sequence MFE -25.76
Consensus MFE -17.69
Energy contribution -20.17
Covariance contribution 2.47
Combinations/Pair 1.12
Mean z-score -2.61
Structure conservation index 0.69
SVM decision value 0.56
SVM RNA-class probability 0.782316
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6042135 100 + 27905053
UUCCUUUGAGUUGCAAGUGACUCACCGAUUGGCACUGCAUAUUUGCAUUAAUUAAUUGCCAUUUACUGGCGCAAAUAUUACACAUUCAAGUGCCGUUCAU---
......(((((((....)))))))..((.(((((((..(((((((((((....))).((((.....))))))))))))..........))))))).))..--- ( -27.30)
>DroSec_CAF1 48059 100 + 1
UUCCUUUGAGUUGCAAGUGACUCACCGAUUGGCACUGCAUAUGUGCAUUAAUUAAUUGCCAUUUACUGGCGCAAAUAUUACACAUUCAAGUGCCGUUCAU---
......(((((((....)))))))..((.(((((((....(((((...((((....(((((.....))))).....)))))))))...))))))).))..--- ( -29.20)
>DroSim_CAF1 49323 100 + 1
UUCCUUUGAGUUGCAAGUGACUCACCGAUUGGCACUGCAUAUGUGCAUUAAUUAAUUGCCAUUUACUGGCGCAAAUAUUACACAUUCAAGUGCCGUUCAU---
......(((((((....)))))))..((.(((((((....(((((...((((....(((((.....))))).....)))))))))...))))))).))..--- ( -29.20)
>DroEre_CAF1 48523 98 + 1
UUUCUUUGAGUUGCAAGUGACUCACCGAUCGGCACUGCAUAUGUGCAUUUAUUAAUUGCCAU-UACUGGCGCAAAUAUUCCGCAUUCAAGUGCAA-GCAU---
..((..(((((((....)))))))..))...(((((....(((((....((((...(((((.-...)))))..))))...)))))...)))))..-....--- ( -24.70)
>DroWil_CAF1 54986 90 + 1
CUCAUUUGAGUG-C-GCCGACU-GUCGAUUUGCAGCACAUAUGCACAUAAAUUAAUUGCAAUAAAUU---GCACAUUUUGCUCAUUCUAAAGCGC----U---
.......(((((-.-((.((.(-(((((((((..(((...((........))....)))..))))))---).))).)).)).)))))........----.--- ( -16.30)
>DroYak_CAF1 50492 103 + 1
UUCCUUUGAGUUGCAAGUGACUCACCGAUUGGCACUGCAUAUGUGCAUUAAUUAAUUGCCAUUUACUGGCGCAAAUAUUCCGCAUUCAAGUGCCGUUCAUUAC
......(((((((....)))))))..((.(((((((....(((((...........(((((.....))))).........)))))...))))))).))..... ( -27.85)
>consensus
UUCCUUUGAGUUGCAAGUGACUCACCGAUUGGCACUGCAUAUGUGCAUUAAUUAAUUGCCAUUUACUGGCGCAAAUAUUACACAUUCAAGUGCCGUUCAU___
......(((((((....)))))))..((.(((((((....(((((...........(((((.....))))).........)))))...))))))).))..... (-17.69 = -20.17 +   2.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:47 2006