Locus 2114

Sequence ID 3R_DroMel_CAF1
Location 6,036,714 – 6,036,827
Length 113
Max. P 0.995889
window3456

overview

Window 6

Location 6,036,714 – 6,036,827
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 94.13
Mean single sequence MFE -24.98
Consensus MFE -22.42
Energy contribution -21.94
Covariance contribution -0.48
Combinations/Pair 1.11
Mean z-score -1.97
Structure conservation index 0.90
SVM decision value 2.63
SVM RNA-class probability 0.995889
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6036714 113 - 27905053
CAAACAAUAAAAAACCACAAAAGCUGGGCAAAUAAAAUUGUCAUAAUCGAUGAUUGUGAAUGUGGCUUUUCCCUCGCACAUCAUUCAAUUUGCCAUAUUUGGCGAAUGCUUUU
..................((((((..(((((......)))))......((((((.(((...(.((.....)))...)))))))))..((((((((....)))))))))))))) ( -25.30)
>DroSec_CAF1 42569 112 - 1
CAAACAAUAAAAAACCACAA-AGCCGGGCAAAUAAAAUUGUCAUAAUCGAUGAUUGUGAAUGUGGCUUUUCCCUCGCACAUCAUUCAAUUCGCCAUAUUCGGUGAAUGCUUUU
..................((-(((.(((.(((........((((((((...))))))))........))))))..............(((((((......)))))))))))). ( -23.09)
>DroSim_CAF1 42977 112 - 1
CAAACACUAAAAAACCACAA-AGCCGGGCGAAUAAAAUUGUCAUAAUCGAUGAGUGUGAAUGUGGCUUUUCCCUCGCACAUCAUUCAAUUCGCCAUAUUCGGCGAAUGCUUUU
..................((-(((..(((((......)))))......(((((((((((....((......)))))))).)))))..(((((((......)))))))))))). ( -26.60)
>DroEre_CAF1 43063 112 - 1
CAAUCAAUAAAAAACCACAA-AGCCGGGCAAAUAAAAUUGUCAUAUGCGAUGAUUGUGAAUGUGGCAUUUCCCUCGCACAUCAUUCAAUUCGCCAUAUUCGGCGAAUGCUUUU
..................((-(((..(((((......)))))...((.((((((.(((...(.((.....)))...)))))))))))(((((((......)))))))))))). ( -25.20)
>DroYak_CAF1 44797 112 - 1
CAAUCAACAAAAAACCACAA-AGCCGGGCAAAUAAAAUUGUCAUAUUCGAUGAUUGUGAAUGCGGCAUUUCCCUCGCACAUCAUUCAAUUCGCCAUAUACGGCGAAUGCUUUU
..................((-(((..(((((......)))))......((((((.(((...(.((.....)))...)))))))))..(((((((......)))))))))))). ( -24.70)
>consensus
CAAACAAUAAAAAACCACAA_AGCCGGGCAAAUAAAAUUGUCAUAAUCGAUGAUUGUGAAUGUGGCUUUUCCCUCGCACAUCAUUCAAUUCGCCAUAUUCGGCGAAUGCUUUU
.....................(((..(((((......)))))......(((((.((((...(.((.....)))...)))))))))..(((((((......))))))))))... (-22.42 = -21.94 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:45 2006