| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,031,473 – 6,031,576 |
| Length | 103 |
| Max. P | 0.627014 |
| Location | 6,031,473 – 6,031,576 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 76.57 |
| Mean single sequence MFE | -27.41 |
| Consensus MFE | -16.65 |
| Energy contribution | -17.49 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.627014 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6031473 103 - 27905053 ------AUUCAGGCUUAAGACAAUCCAAUCCAAUCUAUGAAGAAUAAAGAUGGAUGCGAUUUGGCAGUCAAGUGCUUCGCCCAUAAAUGCUCUUGAUGAUCCCAGCUUG- ------...(((((.......((((((.((((.(((...........))))))))).))))(((..((((((.((.............)).))))))....))))))))- ( -22.92) >DroPse_CAF1 35302 88 - 1 ------CUGAGGGGGGAGGGCGGA------CGGCCUGCGAGGAGUG------CCUGAA---AGACAGUCAAGUGCUUUAGCCAUA-AUGCUCUUGAUGAUCCGCCCCUGA ------........((.(((((((------.(((((......)).)------))....---.....((((((.((.(((....))-).)).))))))..))))))))).. ( -30.80) >DroSec_CAF1 37374 98 - 1 ------AUUCAGGCCUAAG-----CCAAUCCAAUCUAUGAAGAAUAAAGAUGGAUGCGAUUUGGCAGUCAAGUGCUUCGCCCAUAAAUGUUCUUGAUGAUCCCAGCUUG- ------.....(((....)-----))......(((.((.(((((((...((((..((((...((((......))))))))))))...))))))).))))).........- ( -23.70) >DroSim_CAF1 37453 98 - 1 ------AUUCGGGCUUAAG-----CCAAUCCAAUCUAUGAAGUAUAAAGAUGGAUGCGAUUUGGCAGUCAAGUGCUUCGCCCAUAAAUGCUCUUGAUGAUCCCAGCUUG- ------...((((((...(-----((((..(.((((((...........))))))..)..))))).((((((.((.............)).))))))......))))))- ( -24.52) >DroEre_CAF1 37452 103 - 1 ------AUUCAGGCUUAAGCCGAACCAAUCCAAUCUACAAAGAACAAAGAUGGAUGUGAUUUGGCAGUCAAGUGCUUUCUCCAUAAAUGCUCUUGAUGAUCCGAGCUUG- ------...(((((((..((((((.(((((((.(((...........)))))))).)).)))))).((((((.((.............)).)))))).....)))))))- ( -30.82) >DroYak_CAF1 39325 109 - 1 AUGGAGAUUCAGGCUUAAGCCAAACCAAUCCAAUCUAUGAAGAAUAAAGAUGGAUGUGAUUUGGCAGUCAAGUGCUUUGUCCAUAAAUGCUCUUGAUGAUCCGAGCUUG- .........(((((((..((((((.(((((((.(((...........)))))))).)).)))))).((((((.((((((....)))).)).)))))).....)))))))- ( -31.70) >consensus ______AUUCAGGCUUAAG_C_AACCAAUCCAAUCUAUGAAGAAUAAAGAUGGAUGCGAUUUGGCAGUCAAGUGCUUCGCCCAUAAAUGCUCUUGAUGAUCCCAGCUUG_ .........((((((............(((((.(((...........)))))))).......((..((((((.((.............)).))))))...)).)))))). (-16.65 = -17.49 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:43 2006