| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,029,010 – 6,029,105 |
| Length | 95 |
| Max. P | 0.511919 |
| Location | 6,029,010 – 6,029,105 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 80.89 |
| Mean single sequence MFE | -20.27 |
| Consensus MFE | -11.98 |
| Energy contribution | -11.95 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.59 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.511919 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6029010 95 - 27905053 CAAUUGCAAAAACAGCACCAGCAUCGUAAAGUCAACAAUCCGACUUGAAAUAAACAAAUGGAAAAUAGAGCGCC--------AGAGCUCCGAGCUCAGUGCUA .............(((((.(((.(((..(((((........))))).....................((((...--------...))))))))))..))))). ( -21.90) >DroSec_CAF1 34944 86 - 1 CAAUUGCGG-UGCUGUUUUCGCAUCGUAAAGUCAACAAUCCGACUUGAAAUAAACAAAUGGAAAAUAG----------------AGCUUCGAGCUCAGUGCUA ....(((((-(((.......))))))))(((((........)))))............(((...((.(----------------(((.....)))).)).))) ( -20.30) >DroSim_CAF1 35000 95 - 1 CAAUUGCAAAAACAGCACCAGCAUCGUAAAGUCAACAAUCCGACUUGAAAUAAAGAAAUGGAAAAUAGAGCGCC--------AGAGCUUCGAGCUCAGUGCUA ....(((.......)))(((...((...(((((........)))))........))..))).......(((((.--------.((((.....)))).))))). ( -19.90) >DroEre_CAF1 35006 95 - 1 CAAUUGCAAAAACAGCACCAGCAUCGUAAAGUCAACAAUCCGACUUGAAAUAAACAAAUGGAAAAUAGAGCGCC--------AGAGCUUCGAGCUCAGUGCUA .............(((((.(((.(((..(((((........))))).....................((((...--------...))))))))))..))))). ( -19.50) >DroYak_CAF1 36842 95 - 1 CAAUUGCAAAAACAGAACCAGCAUCGUAAAGUCAACAAUCCGACUUGAAAUAAACAAAUGGCAAACAGAGCGCC--------AGAGCUUCGAGCUCAGUGCUA ...................(((((....(((((........)))))............((((.........)))--------)((((.....)))).))))). ( -18.80) >DroAna_CAF1 31074 95 - 1 AAACUGCAACAGC------AGCUCCGUAAAUUGAGCAAA-CGACUUGAAAUAAACAAGUGGA-AAUAGAGCGCCGUAGUGUCAGAGUGUCCGACUCAGAGCUG ..(((((....((------.((((........))))...-(.(((((.......))))).).-......))...)))))....((((.....))))....... ( -21.20) >consensus CAAUUGCAAAAACAGCACCAGCAUCGUAAAGUCAACAAUCCGACUUGAAAUAAACAAAUGGAAAAUAGAGCGCC________AGAGCUUCGAGCUCAGUGCUA ...................(((((....(((((........))))).....................................((((.....)))).))))). (-11.98 = -11.95 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:42 2006