| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 871,212 – 871,332 |
| Length | 120 |
| Max. P | 0.981568 |
| Location | 871,212 – 871,332 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.25 |
| Mean single sequence MFE | -35.45 |
| Consensus MFE | -33.66 |
| Energy contribution | -33.60 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.981568 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 871212 120 - 27905053 CGUUUUGUAAGCAGAACGUAACGCACGUUCGCAUAAAAAGCAACAGCAACAAAAAAGCAACAGCAAUUGUGGGACCGGCAGCGGAAACAAGCUGCACACAAUGGAUCCAUACCCGAGCUG .(((((.((.((.((((((.....)))))))).)).)))))..((((.........((....))...((((((.(((((((((....)..)))))......))).)))))).....)))) ( -35.00) >DroSec_CAF1 46214 120 - 1 CGUUUUGUUAGCAGAACGUAACGCACGUUCGCAUAAAAAGCAACAGCAACAAAAAAGCAACAGCAAUUGCGGGACCGGCAGCGGAAACAAGCCGCACACAAUGGAUCCAUACCCGAGCUG ..(((((((.((.((((((.....))))))((.......))....)))))))))......((((.....((((..((((...(....)..))))......(((....))).)))).)))) ( -34.60) >DroSim_CAF1 45484 120 - 1 CGUUUUGUAAGCAGAACGUAACGCACGUUCGCAUAAAAAGCAACAGCAACAAAAAAGCAACAGCAAUUGCGGGACCGGCAGCGGAAACAAGCUGCACACAAUGGAUCCAUACCCGAGCUG .(((((.((.((.((((((.....)))))))).)).)))))..((((.........((((......))))(((....((((((....)..))))).....(((....))).)))..)))) ( -36.90) >DroEre_CAF1 45417 120 - 1 CGUUUUGUAAGCAGAACGUAACGCACGUUCGCAUAAAAAGCAGCAGCAACAAAAAAGGAACAGCGAUUGCGGGAACGGCGGCGGAAACAAGCUGCACACAAUGGAUCCAUGCCCGAGCUG ..((((((..((.((((((.....)))))))).......((....)).))))))......((((.....((((....((((((....)..))))).....(((....))).)))).)))) ( -35.30) >consensus CGUUUUGUAAGCAGAACGUAACGCACGUUCGCAUAAAAAGCAACAGCAACAAAAAAGCAACAGCAAUUGCGGGACCGGCAGCGGAAACAAGCUGCACACAAUGGAUCCAUACCCGAGCUG ..((((((..((.((((((.....)))))))).......((....)).))))))......((((.....((((....((((((....)..))))).....(((....))).)))).)))) (-33.66 = -33.60 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:39 2006