Locus 2106

Sequence ID 3R_DroMel_CAF1
Location 6,003,797 – 6,003,888
Length 91
Max. P 0.500000
window3443

overview

Window 3

Location 6,003,797 – 6,003,888
Length 91
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 80.62
Mean single sequence MFE -28.21
Consensus MFE -18.12
Energy contribution -17.57
Covariance contribution -0.55
Combinations/Pair 1.27
Mean z-score -1.36
Structure conservation index 0.64
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6003797 91 + 27905053
UUGG--AUCGGCAGUUUUCCAGCUGCCCGAGGAUUGCCUCAUAGUUCACAGUUGGUGGGGUUUUGG--CA-GGGUCUUUGCACUAACUCACUGCCU
....--...((((((...(((((((...((((....))))........)))))))..(((((...(--((-(.....))))...))))))))))). ( -29.70)
>DroPse_CAF1 15263 95 + 1
GCUGCUUUUGGCGGUUUUCCAGCUGCCA-GCGAUUGCCUAACAAUUCACAGUUGGUGAUUUUUUCGGUUAGGGGCUUUUCCACUAGCUGUCUGCCU
........(((((((......)))))))-(((((..((.(((........)))))..)))....((((((((((....))).)))))))...)).. ( -28.40)
>DroSec_CAF1 15652 91 + 1
UUGG--AUCGGCAGUUUUCCAGCUGCCCGAGGAUUGCCUCAUAGUUCACAGUUGGUGGAUUUUCGG--CA-GGGUCUUUGCACUAACUCACUGCCU
....--...((((((.......(((((.((((....))))..(((((((.....)))))))...))--))-)(((......))).....)))))). ( -28.60)
>DroEre_CAF1 16095 91 + 1
UUGC--AUCGGCAGUUUUCCAGCUGCUAAAAGAUUGCCUCAUAGUUCACAGUUGGUGGCUUUUUGG--CA-GGGUCUCUGCACUAACUCACUGCCU
....--...((((((.......((((((((((.(..((...............))..).)))))))--))-)(((......))).....)))))). ( -25.56)
>DroYak_CAF1 17288 91 + 1
UUGG--AUCGGCAGUUUUCCAGCUGCCCUAAGAUUGCCCCAUAGUUCACAGUUGGUGGCUUUUUGG--CA-GGGUCUUUGCACUAGCUCGCUGCCU
....--...((((((......))))))...(((..((((((...........))).)))..)))((--((-(.(.....((....)).).))))). ( -28.60)
>DroPer_CAF1 15349 95 + 1
GCUGCUUUUGGCGGUUUUCCAGCUGCCA-GCGAUUGCCUAACAAUUCACAGUUGGUGAUUUUUUCGGUUAGGGGCUUUUCCACUAGCUGUCUGCCU
........(((((((......)))))))-(((((..((.(((........)))))..)))....((((((((((....))).)))))))...)).. ( -28.40)
>consensus
UUGG__AUCGGCAGUUUUCCAGCUGCCA_AAGAUUGCCUCAUAGUUCACAGUUGGUGGCUUUUUGG__CA_GGGUCUUUGCACUAACUCACUGCCU
.........((((((...(((((((......(((((.....)))))..)))))))................((((..........)))))))))). (-18.12 = -17.57 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:33 2006