| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,002,966 – 6,003,070 |
| Length | 104 |
| Max. P | 0.999687 |
| Location | 6,002,966 – 6,003,070 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 72.51 |
| Mean single sequence MFE | -23.93 |
| Consensus MFE | -16.16 |
| Energy contribution | -16.83 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.68 |
| SVM decision value | 3.89 |
| SVM RNA-class probability | 0.999687 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6002966 104 + 27905053 UUUCAAUAAAAAGCUUAU---GCUUUUAAUCCAUUUUUACCAAUUUA------------AACAAAGGUUUAAUGUACUCGUGGUUUACUGUAUAACACUGUACAUAAGCUGUGACCAUA ........((((((....---))))))....((((...(((......------------......)))..))))...(((..(((((.((((((....)))))))))))..)))..... ( -20.60) >DroSec_CAF1 14851 103 + 1 UUUCAUUAAAAAGCUUAAGAAGCUUAUG----AUUUGUACCAAAUGA------------AACAUAGGUUUAAUGUACUCGUGGUUUACUGUACAACACUGUACAUAAGCUGUGACUAUA ...................(((((((((----.((..(.....)..)------------).)))))))))..((((.(((..(((((.((((((....)))))))))))..))).)))) ( -25.10) >DroYak_CAF1 16449 116 + 1 UUUCCAAGAACAGCUCUU---ACUCUUAAUUGAGGUGUACAGAUUUAAAAAAUGUUUUUAUCAAAGGUUUUUUGUACUCGUGGUUUACUGUACAACACUGUACAUAAGCUGCGGCUAUA ...........(((....---.(((......)))..(((((((......((((.(((.....))).))))))))))).((..(((((.((((((....)))))))))))..)))))... ( -26.10) >consensus UUUCAAUAAAAAGCUUAU___GCUUUUAAU__AUUUGUACCAAUUUA____________AACAAAGGUUUAAUGUACUCGUGGUUUACUGUACAACACUGUACAUAAGCUGUGACUAUA ........((((((.......)))))).............................................((((.(((..(((((.((((((....)))))))))))..))).)))) (-16.16 = -16.83 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:32 2006