Locus 2104

Sequence ID 3R_DroMel_CAF1
Location 6,002,536 – 6,002,627
Length 91
Max. P 0.562198
window3441

overview

Window 1

Location 6,002,536 – 6,002,627
Length 91
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 75.08
Mean single sequence MFE -26.48
Consensus MFE -14.25
Energy contribution -13.45
Covariance contribution -0.80
Combinations/Pair 1.29
Mean z-score -1.58
Structure conservation index 0.54
SVM decision value 0.06
SVM RNA-class probability 0.562198
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6002536 91 + 27905053
CCAACAUCC-------ACAUCACAGCCACAACAACCACAACAGAGGCUUGGAAUGCUGUCAAAGUC------------GAAGCGUGGAAAGCCGUG------UCUGGGCAUGUGAA
.........-------...((((((((.(((((...........(((((...(((((.((......------------)))))))...))))).))------).))))).))))). ( -25.60)
>DroSec_CAF1 14474 91 + 1
CCAACAUCC-------ACAUCACAGCCACAACAACCACAACAGUGGCUUGGAAUGCUGUCAAAGUC------------GAAGCGUGGAAAGUCGUG------UCUGGGCAUGUGAA
.........-------...((((((((.(((((.((((....))))(((...(((((.((......------------)))))))...)))...))------).))))).))))). ( -24.20)
>DroEre_CAF1 14832 97 + 1
CCAACAUCC-ACAUCCACAUCACAGCCACAACAACCACAACAGCAGCCUGGAAUGCUGUCAAAGUC------------GAAGCGUGGAAAGCCGUG------UCUGGGCAUGUGAA
........(-((((((....(((.((........((((.((((((........))))))....((.------------...))))))...)).)))------....)).))))).. ( -23.80)
>DroYak_CAF1 16034 98 + 1
CCAACAUCCAACAUCCACAUCACAGCCACAACAACCACAACAGCAGUCUGGAAUGCUGUCAAAGUC------------GAAGCGUGGAAAGCCGUG------UCUGGGCAUGUGAA
...................((((((((.(((((.((((.((((((........))))))....((.------------...)))))).......))------).))))).))))). ( -23.80)
>DroMoj_CAF1 19082 85 + 1
ACAACGAGA-------ACAA-----CG-CAACUCGAACAACAUCGGCCCGGAAUGCUGUCAAAGCU------------GAAGCGUGGAAACCCUUG------UCUGGGCAUGUGUA
....((((.-------....-----..-...))))....((((..((((((((((((.(((....)------------)))))))(....).....------)))))))..)))). ( -25.30)
>DroAna_CAF1 12980 100 + 1
--------U-------ACAU-GCAUCGAAAUAAGCCACAGCAGCGGCUUGGAAUGCUGUCAAAGUCGAGCUCAGACCCGAAGCGUGGAAAGCCGUGUCUGUGUCUGGGCAUGUGAA
--------(-------((((-((.........((.(((((..(((((((...(((((.((...(((.......)))..)))))))...)))))))..))))).))..))))))).. ( -36.20)
>consensus
CCAACAUCC_______ACAUCACAGCCACAACAACCACAACAGCGGCCUGGAAUGCUGUCAAAGUC____________GAAGCGUGGAAAGCCGUG______UCUGGGCAUGUGAA
.......................................(((...((((((((((((.......................)))))((....)).........))))))).)))... (-14.25 = -13.45 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:31 2006