| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,986,985 – 5,987,092 |
| Length | 107 |
| Max. P | 0.704179 |
| Location | 5,986,985 – 5,987,092 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 80.61 |
| Mean single sequence MFE | -28.63 |
| Consensus MFE | -15.35 |
| Energy contribution | -16.76 |
| Covariance contribution | 1.41 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.704179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5986985 107 + 27905053 UCAGAAAACAUCGAAAAUAUAC-UUUCGUUUUGUUUUGAUUAACAGCCCUGCCUUGCAAAAAUACCAGGGCUGCCAGCUACACAAGAAAACAGAGC---UGCGGACUGUUC---- .(((((((((.(((((......-)))))...))))))......((((((((...(......)...))))))))((((((..............)))---)).)..)))...---- ( -26.54) >DroSec_CAF1 15610 107 + 1 UCAGAAAACAUCGAAAAUAUAC-UUUCGUUUUGUUUUGAUUAACAGCCCUGCCUUGCAAAAAUACCAGGGCUGCUAACUACACAAGCAAACAGGGC---UGCGGACUGUUC---- .(((((((((.(((((......-)))))...))))))......(((((((((((((.........))))))((((.........))))...)))))---))....)))...---- ( -31.40) >DroSim_CAF1 16438 107 + 1 UCAGAAAACAUCGAAAAUAUAC-UUUCGUUUUGUUUUGAUUAACAGCCCUGCCUUGCAAAAAUACCAGGGCUGCAAGCUACGCAAGUAAACAGGGC---GGCGGACUGUUC---- ((((((.....(((((......-))))).....))))))..(((((((((((((((............(((.....)))((....))...))))))---)).)).))))).---- ( -32.90) >DroEre_CAF1 22449 107 + 1 UCAGAAAACAUCGAAAAUAUUC-UUUCGUUUUGUUUUGAUUAACAGCCCUGCCUUGCAAAAAUACCAGGGCUGGAAGCUACGCAAGCAAAAAGGGC---UGCGGACUUUUC---- ((((((.....(((((......-))))).....))))))....(((((((((((((.........)))))).....(((.....)))....)))))---))..........---- ( -30.10) >DroYak_CAF1 16098 107 + 1 UCAGAAAACAUCGAAAAUAUAC-UUUCGUUUUGUUUUGAUUAACAGCCCUGGCUUGCAAAUAUACCAGGGCUGGAAACUACGCAAGCAAACGGGGC---UGCGCACUGUUC---- .(((((((((.(((((......-)))))...))))))......((((((((((((((.......(((....))).......))))))...))))))---))....)))...---- ( -34.64) >DroPer_CAF1 18499 99 + 1 UCCGCAAUCAUCGAAAAUAUAAGAUUUGUUUAAUUGUUAUUUA------UGUUUUGUAAAAUUACGCG---------CUAGGCCA-CAAAUAGGACAUUUGCGGAGAGUUGAGCU (((((((.......(((((...((((.....))))..)))))(------((((((((........((.---------....))..-...)))))))))))))))).......... ( -16.22) >consensus UCAGAAAACAUCGAAAAUAUAC_UUUCGUUUUGUUUUGAUUAACAGCCCUGCCUUGCAAAAAUACCAGGGCUGCAAGCUACGCAAGCAAACAGGGC___UGCGGACUGUUC____ ((((((.....(((((.......))))).....))))))....((((((((..............))))))))...............(((((.((....))...)))))..... (-15.35 = -16.76 + 1.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:26 2006