| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,983,192 – 5,983,294 |
| Length | 102 |
| Max. P | 0.732562 |
| Location | 5,983,192 – 5,983,294 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 79.29 |
| Mean single sequence MFE | -32.78 |
| Consensus MFE | -23.47 |
| Energy contribution | -24.03 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732562 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5983192 102 - 27905053 AGUUGCGAUCAUCUGUGCAUUCGGUUUGGAGGGGAUCCUGCUUGACCUUCGAGCAGAAGGGAUGUAUAGAGCGACCCCUUUUACAAAUGAAAUGAAAGGU-----A-A .(((((.....((((((((((((((((.....)))))(((((((.....)))))))...)))))))))))))))).(((((((.........))))))).-----.-. ( -33.20) >DroPse_CAF1 15082 104 - 1 AGUUGCGAUCGUCGGUGCAUUCGGUCUGCAGCGGAUCCUGCUUGACCUUCGAGCAGAACGGAUGUAUGGAACGGCCUCUG-UGGAGAUAAAA--ACAGGCAGAACA-G ..(((((..((((.((((((((((((((...))))))(((((((.....)))))))...)))))))).).)))..).(((-(..........--))))))))....-. ( -36.50) >DroEre_CAF1 18728 101 - 1 AGUUGCGGUCAUCUGUACACUCGGUUUGGAGAGGAUCCUGCUUGACCUUCGAGCAGAAGGGAUGUAUGGAGCGACCCCUU-UGCAAGCGUAAUAAAAGGC-----A-G ...(((((((.((((((((((((((((.....)))))(((((((.....)))))))..))).))))))))..))))...(-(((....))))......))-----)-. ( -33.10) >DroYak_CAF1 12343 101 - 1 AGUUGCGAUCAUCUGUGCACUCGGUUUGAAGAGGAUCCUGCUUGACCUUCGAGCAGAAGGGAUGAAUGGAGCGACCCCUU-UGCAAACGAAAUAAAAGGU-----A-A .(((((..((((((.(...(((........)))....(((((((.....))))))).).)))))).....))))).((((-(............))))).-----.-. ( -28.40) >DroMoj_CAF1 16584 97 - 1 AAUUGCGAUCGUCUGUGCAUUCCGUUUGCAGUGGAUCCUGUUUGACUUUCGAGCAGAACGGAUGUAUGGAACGCCCCCUA-UUC-------AUGACAGGGA---UAGA ....(((....(((((((((.(((((...........(((((((.....))))))))))))))))))))).)))...(((-(((-------.......)))---))). ( -28.60) >DroPer_CAF1 15065 104 - 1 AGUUGCGAUCGUCGGUGCAUUCGGUCUGCAGCGGAUCCUGCUUGACCUUCGAGCAGAACGGAUGUAUGGAGCGGCCUCUG-UGGAGAUCAAA--ACAGGCAGAACA-G ..(((((..((((.((((((((((((((...))))))(((((((.....)))))))...)))))))).)).))..).(((-(.(....)...--))))))))....-. ( -36.90) >consensus AGUUGCGAUCAUCUGUGCAUUCGGUUUGCAGAGGAUCCUGCUUGACCUUCGAGCAGAACGGAUGUAUGGAGCGACCCCUU_UGCAAAUGAAAU_AAAGGC_____A_A .(((((.....((((((((((((((((.....)))))(((((((.....)))))))...)))))))))))))))).((((...............))))......... (-23.47 = -24.03 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:23 2006