Locus 2097

Sequence ID	3R_DroMel_CAF1
Location	5,975,161 – 5,975,254
Length	93
Max. P	0.866360

overview

Window 9

Location	5,975,161 – 5,975,254
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	95.27
Mean single sequence MFE	-18.90
Consensus MFE	-16.22
Energy contribution	-16.50
Covariance contribution	0.28
Combinations/Pair	1.08
Mean z-score	-1.56
Structure conservation index	0.86
SVM decision value	0.85
SVM RNA-class probability	0.866360
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5975161 93 - 27905053
AAUUGAAUAAUUGCAUUAACUGGCACUGAAAAGUUCCAUGAAUGCGCUGCUUGCUUUCGAAAUGAAUAUUAAGUGCGAAAAUUCCAACAACUG
....((((....(((((...(((.(((....))).)))..)))))((.(((((..(((.....)))...)))))))....))))......... ( -18.90)
>DroSec_CAF1 3954 93 - 1
AAUUGAAUAAUUGCAUUAACUGGCACUGAAAAGUUCCAUGAAUGCGCUGCUUGCUUUCGAAAUGAAUAUUAAGUGCAAAAAUUCCAACAACUG
....((((....(((((...(((.(((....))).)))..)))))((.(((((..(((.....)))...)))))))....))))......... ( -18.90)
>DroSim_CAF1 4010 93 - 1
AAUUGAAUAAUUGCAUUAACUGGCACUGAAAAGUUCCAUGAAUGCGCUGCUUGCUUUCGAAUUGAAUAUUAAGUGCAAAAAUUCCAACAACUG
....((((....(((((...(((.(((....))).)))..)))))((.(((((..(((.....)))...)))))))....))))......... ( -18.90)
>DroEre_CAF1 4111 93 - 1
AAUUGAAUAAUUGCAUUAACUGACACUGAAAAGUUCCAUGAAUGCGCUGGUUGCUUUUGAAAUAAAUAUUAAGUGCACCAAUUCCCACAACUG
....((((....(((((...((..(((....)))..))..)))))..((((.((.(((((........))))).))))))))))......... ( -16.70)
>DroYak_CAF1 4357 93 - 1
AAUUGAAUAAUUGCAUUAACUGGCACUGAAAAGUUCCAUGAAAGCGCUGCUUGCUUUCGAAAUAAAUAUUAAGUGCACAAAUUCCAACAACUG
....((((...((((((...(((.(((....))).)))((((((((.....))))))))............))))))...))))......... ( -21.10)
>consensus
AAUUGAAUAAUUGCAUUAACUGGCACUGAAAAGUUCCAUGAAUGCGCUGCUUGCUUUCGAAAUGAAUAUUAAGUGCAAAAAUUCCAACAACUG
....((((..(((((((...(((.(((....))).)))((((.(((.....))).))))............)))))))..))))......... (-16.22 = -16.50 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:20 2006