Locus 2094

Sequence ID	3R_DroMel_CAF1
Location	5,971,952 – 5,972,045
Length	93
Max. P	0.622584

overview

Window 6

Location	5,971,952 – 5,972,045
Length	93
Sequences	5
Columns	94
Reading direction	forward
Mean pairwise identity	84.62
Mean single sequence MFE	-27.62
Consensus MFE	-18.63
Energy contribution	-18.63
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-1.84
Structure conservation index	0.67
SVM decision value	0.18
SVM RNA-class probability	0.622584
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5971952 93 + 27905053
UGUGGUUUAGUUUGUCAGUCAGGU-GGUGGGGCUGCAUAUUAACAGGUAGCUCAUAACGUGUAACCCACCAUCGUGGUUACCAAACCGCCUCCA
...(((...(((((..(..(((((-((((((..((((..(((..((....))..)))..)))).))))))))).))..)..))))).))).... ( -31.30)
>DroSec_CAF1 847 79 + 1
UGUGGUUUAGUUUGUCAGUCAGGU-GGUGGUGCUGCAUAUUA--------------ACGUGUAACCCACCAUCGUGGUUACCAAACCGCCUCCA
...(((...(((((..(..(((((-(((((.(.(((((....--------------..))))).))))))))).))..)..))))).))).... ( -27.50)
>DroSim_CAF1 868 79 + 1
UGUGGUUUAGUUUGUCAGUCAGGU-GGUGGUGCUGCAUAUUA--------------ACGUGUAACCCACCAUCGUGGUUACCAAACCGCCUCCA
...(((...(((((..(..(((((-(((((.(.(((((....--------------..))))).))))))))).))..)..))))).))).... ( -27.50)
>DroEre_CAF1 872 90 + 1
UGUGGUUUAGUCAGU----CAGUCAGGUGGUGCUGCAUAUUAACUGGUGCCUCAUAACGUGUAACCCACCAUCGUGGUUACCAAACCGCCUCCA
.(((((((.((.(..----((....(((((((.((((..(((...(....)...)))..))))...))))))).))..))).)))))))..... ( -24.10)
>DroYak_CAF1 856 94 + 1
UGUGGUUUAGUCAGUCAGUCAGUCAGGUGGUGCUGCAUAUUAACUGGUGGCUCACAACGUGUAACCCACCAUCGUGGUUACCAAACCGCCUCCA
.(((((((.((.(((((.(((((...(((......)))....)))))))))).))...(.((((((.((....))))))))))))))))..... ( -27.70)
>consensus
UGUGGUUUAGUUUGUCAGUCAGGU_GGUGGUGCUGCAUAUUAAC_GGU__CUCA_AACGUGUAACCCACCAUCGUGGUUACCAAACCGCCUCCA
..(((....................(((((.(.(((((....................))))).))))))...((((((....))))))..))) (-18.63 = -18.63 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:17 2006