| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,965,528 – 5,965,650 |
| Length | 122 |
| Max. P | 0.973640 |
| Location | 5,965,528 – 5,965,621 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 78.92 |
| Mean single sequence MFE | -21.96 |
| Consensus MFE | -15.32 |
| Energy contribution | -15.80 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.970684 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5965528 93 + 27905053 UACCCACUCUCACUGCUCCCAAGCGGAGGUGGCCUCUUUUCUAGCUAGAUAUAGCUAUAAAUAUAGGUAAGAUCACAAGAAUAUCGAAAAAAA- ...((((.(((...(((....))).)))))))(((..(((.((((((....)))))).)))...)))..........................- ( -19.80) >DroSec_CAF1 16981 93 + 1 UGCCCACUCUCACUGCUCCCCAGCGGAGAUGGUCUCUUUUCUAGCUACAUAUAGCUAUAAUUAUAGGUGAGAUCAUCAAAAUAUUGAAAGAAA- ......((.((((((((....))))).(((((((((...((((((((....)))))........))).))))))))).......))).))...- ( -23.80) >DroSim_CAF1 17252 90 + 1 UGCCCACUCUCACUGCUUCCCAGCGGAGAUGGUCUCUUUCCUAGCUAGAUAUAGCUAUAAUUAUAGGUGAGAUCAUCAAAAUAUUGAA---AA- .........((((((((....))))).(((((((((...((((((((....)))))........))).))))))))).......))).---..- ( -25.70) >DroEre_CAF1 18149 80 + 1 UGCCCACUCUCGCUGCUCCCCGGCGGAGGUGCUCUCUUUUCUAGCUAGAUAUAGCUACAGAUAUAGGUGAGAUCCCUUA----------A---- ....((((..(((((.....)))))..))))(((.(((.((((((((....)))))..)))...))).)))........----------.---- ( -23.80) >DroYak_CAF1 17787 92 + 1 UGCCCACUCUCACUGCUCCCCAGCGGAGAUGCUGUCUUUUCUAGCUAGAUUUAGCUAUAGAUAUAGGUAAACUCCAAAA--UAUAUAAUAAUAU ((((.....((.(((((....))))).))...(((((....((((((....)))))).)))))..))))..........--............. ( -16.70) >consensus UGCCCACUCUCACUGCUCCCCAGCGGAGAUGGUCUCUUUUCUAGCUAGAUAUAGCUAUAAAUAUAGGUGAGAUCACAAAAAUAUUGAA_AAAA_ .......(((((((.((((.....)))).............((((((....))))))........)))))))...................... (-15.32 = -15.80 + 0.48)
| Location | 5,965,545 – 5,965,650 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 68.05 |
| Mean single sequence MFE | -22.27 |
| Consensus MFE | -10.36 |
| Energy contribution | -10.08 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.47 |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.973640 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5965545 105 + 27905053 CCCAAGCGGAGGUGGCCUCUUUUCUAGCUAGAUAUAGCUAUAAAUAUAGGUAAGAUCACAAGAAUAUCGAAAAAAA---------GCAU-AAGAUAAU--UCUUAUCACCUCUUUCG .......(((((((((((..(((.((((((....)))))).)))...))))........(((((((((........---------....-..))).))--))))..))))))).... ( -26.44) >DroSec_CAF1 16998 102 + 1 CCCCAGCGGAGAUGGUCUCUUUUCUAGCUACAUAUAGCUAUAAUUAUAGGUGAGAUCAUCAAAAUAUUGAAAGAAA--------------AAAAUAAUAACAUUAUCACCUCUU-CA ....((.((.(((((((((...((((((((....)))))........))).)))))))))......((....))..--------------..................)).)).-.. ( -18.00) >DroSim_CAF1 17269 99 + 1 UCCCAGCGGAGAUGGUCUCUUUCCUAGCUAGAUAUAGCUAUAAUUAUAGGUGAGAUCAUCAAAAUAUUGAA---AA--------------AUAAUAAUAACAUUAUCACCUCUU-CA ....((.((.(((((((((...((((((((....)))))........))).)))))))))....((((...---.)--------------)))...............)).)).-.. ( -23.60) >DroEre_CAF1 18166 96 + 1 CCCCGGCGGAGGUGCUCUCUUUUCUAGCUAGAUAUAGCUACAGAUAUAGGUGAGAUCCCUUA----------A--------AUAUACAUCAGGCCAUU--UCUCAUUACCUCUU-UG .......(((((((..((..(((.((((((....)))))).)))...))((((((..(((..----------.--------.........))).....--))))))))))))).-.. ( -20.50) >DroYak_CAF1 17804 112 + 1 CCCCAGCGGAGAUGCUGUCUUUUCUAGCUAGAUUUAGCUAUAGAUAUAGGUAAACUCCAAAA--UAUAUAAUAAUAUACAUAUAUACCCCGGGGCAUU--UCUCAUUACCUCUU-UG ((((...((((.((((....(((.((((((....)))))).)))....))))..))))...(--(((((..........)))))).....))))....--..............-.. ( -22.80) >consensus CCCCAGCGGAGAUGGUCUCUUUUCUAGCUAGAUAUAGCUAUAAAUAUAGGUGAGAUCACAAAAAUAUUGAA_AAAA__________C___AAGAUAAU__UCUUAUCACCUCUU_CG .......(((((...)))))....((((((....)))))).......((((((....................................................))))))...... (-10.36 = -10.08 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:12 2006