| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,963,640 – 5,963,742 |
| Length | 102 |
| Max. P | 0.906692 |
| Location | 5,963,640 – 5,963,742 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 70.95 |
| Mean single sequence MFE | -17.12 |
| Consensus MFE | -9.68 |
| Energy contribution | -9.76 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.906692 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5963640 102 - 27905053 CGGCAAGCGGGAGCAUAUGAAAUUCUAAAUAUAAACAAUGCCAGGUAUAACUGUGCACACCC-CC---ACCCCCCCC-UCCUUCAAACCAUCUUCC--ACCCCCUUUCA .((...(.(((((.((((..........))))......((((((......))).))).....-..---........)-)))).)...)).......--........... ( -13.60) >DroSec_CAF1 15151 85 - 1 CGGCAAGCGGGAGCGUAUGAAAUGCUAAAUAUAAACAAUGCCAGGUAUAACUGUGCCUAACC-C--------CCUCC-CAC------------UCC--AACCCCAUUCA .((..((.((((((((.....)))).................((((((....))))))....-.--------..)))-).)------------)))--........... ( -17.50) >DroSim_CAF1 15392 85 - 1 CGGCAAGCGGGAGCAUAUGAAAUGCUAAAUAUAAACAAUGCCAGGUAUAACUGUGCCUAACC-C--------CCUCC-CAC------------UGC--AACCCCAUUCA ..(((.(.((((((((.....)))).................((((((....))))))....-.--------..)))-).)------------)))--........... ( -19.30) >DroYak_CAF1 15828 100 - 1 CGGCAAGCGGGAGCAUAUGAAAUGCUAAAUAUAAACAAUGCCAGGUAUAACUGUGCCCCCCC-C--------CUUGCCCAAUUACCCCCAUUUUCCACACCCCCCUUCA .((((((.((((((((.....))))).............(((((......))).))....))-)--------))))))............................... ( -24.90) >DroAna_CAF1 15014 102 - 1 UGGCAAACGAGAGCGUAUGAAAUGCUAAAUAUAAACAAUGUUGGCAGUA---GUACCACCCCCCCAAUACACCCACC-CCCCACCACCCACC-UCC--CACCACUUAUA (((.....((((((((.....)))))............((((((..(..---(.....)..).))))))........-.............)-)).--..)))...... ( -10.30) >consensus CGGCAAGCGGGAGCAUAUGAAAUGCUAAAUAUAAACAAUGCCAGGUAUAACUGUGCCCACCC_C________CCUCC_CAC______CCA___UCC__AACCCCAUUCA ........((((((((.....))))).............(((((......))).)).............................................)))..... ( -9.68 = -9.76 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:11 2006