| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,955,278 – 5,955,376 |
| Length | 98 |
| Max. P | 0.563619 |
| Location | 5,955,278 – 5,955,376 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.55 |
| Mean single sequence MFE | -35.70 |
| Consensus MFE | -26.33 |
| Energy contribution | -26.33 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.563619 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5955278 98 - 27905053 CU----------------------UUUCAGGUAAUGGAGAGGCGUCUUGGUGCUUCUCACAGAUUAAAGGCGCCCUAGACGAUGAUGUCACGGAUGCAGACAUCAUAUCCUGCGUGGAAU ..----------------------(((((.(((..(((....(((((.(((((((............)))))))..)))))((((((((.........)))))))).)))))).))))). ( -33.20) >DroVir_CAF1 7449 104 - 1 CU--------------UUU--CGUCGACAGGUAAUGGAGAGGCGUCCUGGUGCUUCUCACAGAUCAAGGGCGCCCUGGACGAUGAUGUCACCGAUGCGGAUAUCAUAUCGUGCGUGGAGU ..--------------...--..((.((.........((.(((((((((((.((......))))).))))))))))(.(((((((((((.........)))))))..)))).))).)).. ( -32.10) >DroGri_CAF1 7684 120 - 1 CUCUCUCUCUCUCUGUUUGCACGCGGACAGGUAAUGGAGAGGCGUCCUGGUGCUUCUCACAGAUCAAGGGCGCCUUAGACGAUGAUGUCACCGAUGCGGAUAUCAUAUCCUGCGUGGAGU ...(((((...((((((((....))))))))....)))))(((((((((((.((......))))).))))))))...(((......))).((.(((((((((...))))).))))))... ( -41.80) >DroWil_CAF1 7845 104 - 1 CU--------------CUU--AUUUCACAGGUAAUGGAGAGGCAUCGUGGUGCUUCUCACAGAUUAAAGGCGCCUUAGACGAUGAUGUCACUGAUGCGGAUAUCAUAUCCUGUGUGGAGU ((--------------((.--....((((((...(((((((((((....))))))))).)).....(((....))).....((((((((.(......)))))))))..)))))).)))). ( -34.60) >DroMoj_CAF1 7246 117 - 1 CUUU-UCAUUUUUUGGUUG--GGUCGACAGGUAAUGGAGAGGCGUCCUGGUGCUUCUCACAGAUCAAGGGCGCCCUAGACGAUGAUGUCACCGAUGCGGAUAUCAUAUCCUGCGUGGAAU ..((-((((......((((--(...((((..((.((.((.(((((((((((.((......))))).))))))))))...)).)).)))).)))))(((((((...))))).)))))))). ( -35.80) >DroPer_CAF1 7618 98 - 1 CU----------------------UUGCAGGUAAUGGAGAGGCGUCCUGGUGCUUCUCACAGAUUAAGGGCGCCUUGGACGAUGAUGUCACAGAUGCGGAUAUCAUAUCCUGCGUGGAAU ((----------------------.((((((...((..((((((((((.(((.....)))......))))))))))...))((((((((.(......)))))))))..)))))).))... ( -36.70) >consensus CU______________UU____GUUGACAGGUAAUGGAGAGGCGUCCUGGUGCUUCUCACAGAUCAAGGGCGCCCUAGACGAUGAUGUCACCGAUGCGGAUAUCAUAUCCUGCGUGGAAU ...........................((.(((..(((..((((((((.(((.....)))......)))))))).......((((((((.........)))))))).)))))).)).... (-26.33 = -26.33 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:10 2006