Locus 2089

Sequence ID 3R_DroMel_CAF1
Location 5,947,706 – 5,947,821
Length 115
Max. P 0.552995
window3418

overview

Window 8

Location 5,947,706 – 5,947,821
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.32
Mean single sequence MFE -31.58
Consensus MFE -25.94
Energy contribution -26.10
Covariance contribution 0.16
Combinations/Pair 1.15
Mean z-score -1.37
Structure conservation index 0.82
SVM decision value 0.04
SVM RNA-class probability 0.552995
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5947706 115 + 27905053
-----UUAUCCUAACAUCUUUAUAGUUAAUCCCAUAUUACUGCAAGAUGAAAGCCUGGAGAGAUCUGGGUAUUACCUAUAUCCAGUAUUCCAACAUCGCAGCCCGUGUGGUGCGAGAGGC
-----.........((((((..((((............)))).))))))...((((((((....((((((((.....))))))))..))))....(((((.((.....))))))).)))) ( -31.40)
>DroSec_CAF1 60946 115 + 1
-----AUAUCCUAACAUCUUUAUAGUUAAUCCCAUAUUACUGCAAGAUGAAAGCCUGGAGAGAUGUGGGUAUUACCUAUAUCCAGUAUUCCAACAUCGCAGCCCGAGUGGUGCGAGAGGC
-----.........((((((..((((............)))).))))))...((((((((.((((((((.....)))))))).....))))....(((((.((.....))))))).)))) ( -30.30)
>DroSim_CAF1 49729 115 + 1
-----AUAUCCUAACAUCUUUAUAGUUAAUCCCAUAUUACUGCAAGAUGAAAGCCUGGAGAGAUGUGGGUAUUACCUAUAUCCAGUAUUCCAACAUCGCAGCCCGAGUGGUGCGAGAGGC
-----.........((((((..((((............)))).))))))...((((((((.((((((((.....)))))))).....))))....(((((.((.....))))))).)))) ( -30.30)
>DroEre_CAF1 51396 120 + 1
ACACAUUUUCCUACCGACUUUGCAGUGAAUCCCAUAUUACUGCAAGAUGAAAGUGUGGAGAGAUGUAGGUCUUACCUAUAUCCACUAUUCCAACAUCGCAGCCCGCGUGGUGCGAGAGGC
.(((((((((........((((((((((........))))))))))..)))))))))..(.((((((((.....)))))))))......((....(((((.((.....)))))))..)). ( -37.30)
>DroYak_CAF1 53051 115 + 1
-----UUUUCCUACCAACUUUUUAGUAAAUCCCCUAAUACUGCAAGAUGAAGGUCUGGAGAGAUGCGGGUCUUACCUACAUCCAUUAUUCCAACAUCGCAGCCCGCGUGGUGCGAGAGGC
-----(((((.((((((((....))).............((((..((((..((..(((.(.((((..((.....))..))))).)))..))..))))))))......))))).))))).. ( -28.60)
>consensus
_____UUAUCCUAACAUCUUUAUAGUUAAUCCCAUAUUACUGCAAGAUGAAAGCCUGGAGAGAUGUGGGUAUUACCUAUAUCCAGUAUUCCAACAUCGCAGCCCGAGUGGUGCGAGAGGC
..............((((((..((((............)))).))))))...((((((((.((((((((.....)))))))).....))))....(((((.((.....))))))).)))) (-25.94 = -26.10 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:09 2006