| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,919,058 – 5,919,149 |
| Length | 91 |
| Max. P | 0.601100 |
| Location | 5,919,058 – 5,919,149 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 80.32 |
| Mean single sequence MFE | -13.84 |
| Consensus MFE | -10.33 |
| Energy contribution | -10.55 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.601100 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5919058 91 - 27905053 GAGAUUCCACAAUUAUGCGAAAUUAUCGAUCAAAUUUUGCUCUAAGGUCAACCUUAAAUUGAAAAUUCCG----CU-UUUCCACCGCGAAUGUUCC ((.((((..(((((..((((((((........))))))))..(((((....))))))))))........(----(.-........)))))).)).. ( -15.40) >DroVir_CAF1 77047 74 - 1 CACAUUCCGCAAUUAUGCGAAAUUAUCGAUCAAAUUUUGUUCUAAGGUCAAC-UUAAAUUGAAAAUUAAG----UU-UCA---------------- .......((((....))))........((((..............))))(((-((((........)))))----))-...---------------- ( -8.84) >DroPse_CAF1 34313 89 - 1 GAGC-CCCCCAAUUAUGCGAAAUUAUCGAUCAAAUUUUGCUCUAAGGUCAACCUUAAAUUGAAAAUUCAG-----U-UUUCCACCGCGAUUAUUUU ..((-...........((((((((........))))))))..(((((....)))))((((((....))))-----)-).......))......... ( -13.70) >DroYak_CAF1 23601 91 - 1 GAGAUUCCACAAUUAUGCGAAAUUAUCGAUCAAAUUUUGCUCUAAGGUCAACCUUAAAUUGAAAAUUCCG----CU-UUUCCGCGGCGAAUGCUUC (((((((..(((((..((((((((........))))))))..(((((....))))))))))......(((----(.-.....)))).)))).))). ( -20.90) >DroAna_CAF1 32649 84 - 1 GAGAUUCCACAAUUAUGCGAAAUUAUCGAUCAAAUUUUG-UCUAAGGUCAACCUUAAAUUGAAAAUUCCUAUCCCUCUUCCCAUC----------- .........(((((..((((((((........)))))))-).(((((....))))))))))........................----------- ( -10.50) >DroPer_CAF1 37554 89 - 1 GAGC-CCCCCAAUUAUGCGAAAUUAUCGAUCAAAUUUUGCUCUAAGGUCAACCUUAAAUUGAAAAUUCAG-----U-UUUCCACCGCGAUUAUUUU ..((-...........((((((((........))))))))..(((((....)))))((((((....))))-----)-).......))......... ( -13.70) >consensus GAGAUUCCACAAUUAUGCGAAAUUAUCGAUCAAAUUUUGCUCUAAGGUCAACCUUAAAUUGAAAAUUCAG____CU_UUUCCACCGCGA_U_UUU_ .........(((((..((((((((........))))))))..(((((....))))))))))................................... (-10.33 = -10.55 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:49 2006