| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,914,300 – 5,914,404 |
| Length | 104 |
| Max. P | 0.842599 |
| Location | 5,914,300 – 5,914,404 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 84.22 |
| Mean single sequence MFE | -26.95 |
| Consensus MFE | -16.90 |
| Energy contribution | -16.15 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.842599 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5914300 104 - 27905053 CACU-UGGGUGUAUCUCUACUAAUUACCAAACCUAAAGCAUUCGUUUUCCCUGUGUGGCUGCGUGAUUCACCCUGUUUUAAAACACGGGGG-AAAACGAAUAUACA ...(-((((((((...........)))...))))))...(((((((((((((((((....(((.(......).)))......)))).))))-)))))))))..... ( -27.40) >DroSec_CAF1 28021 101 - 1 CAUU-UGGGUGUAUCUCUACUAAUAACCAAACCUAAAGAAUUCGUUUUCCCUGGCUCGCUGCGUGAUUCACCCUGUUUUAAAACACGAGGG-AAAACGAAUAU--- ..((-(((((....................)))))))..((((((((((((((..((((...))))..)..(.((((....)))).)))))-)))))))))..--- ( -26.85) >DroSim_CAF1 16366 102 - 1 CAUUUUGGGUGUAUCUCUACUAAUAACCAAACCUAAAGCAUUCGUUUUCCCUGGCUCGCUGCGUGAUUCACCCUGUUUUAAAACACGAGGG-AAAACGAAUAU--- ..((((((((....................)))))))).((((((((((((((..((((...))))..)..(.((((....)))).)))))-)))))))))..--- ( -27.15) >DroYak_CAF1 18593 101 - 1 CAAU-UGGGUGUAUCCCCACCA-UUGCCCAACCUAAAGCAUUUGUUUUCCCUGCUGCGCAGUGUGAUCCACCCUGUUUUAAAACUCAGGGGGAAAAUAGAAUU--- ...(-((((((...........-.))))))).........((((((((((((((...)))).........(((((..........)))))))))))))))...--- ( -26.40) >consensus CAUU_UGGGUGUAUCUCUACUAAUAACCAAACCUAAAGCAUUCGUUUUCCCUGGCUCGCUGCGUGAUUCACCCUGUUUUAAAACACGAGGG_AAAACGAAUAU___ .....(((((....................)))))....(((((((((((((..........(((...)))...(((....)))...)))).)))))))))..... (-16.90 = -16.15 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:46 2006