| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,903,596 – 5,903,689 |
| Length | 93 |
| Max. P | 0.594590 |
| Location | 5,903,596 – 5,903,689 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 81.03 |
| Mean single sequence MFE | -23.28 |
| Consensus MFE | -14.58 |
| Energy contribution | -15.58 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5903596 93 - 27905053 ---AGCAACUCAAGCGAAUUUUUAUU--GCACAUUUGCGUAAUUCGCACUAAGCGUGUCCAAUUAAAGUUUAAUUGGGUAUUCC--AC------UUGCUGGGCUUU ---..........(((((((.....(--(((....)))).)))))))...((((((..(((((((.....)))))))..)).((--(.------....))))))). ( -23.00) >DroPse_CAF1 17047 99 - 1 GCAAACAAAUUACGCGAAAUUUCAUACGAAAUAUUUUCGUAAUUCGCAUCUGGCUUGACUAAUUACAAUUUGAUUGGG-AUUCCUCGC------AUACAUGGCUUG ((.....(((((((.((((((((....))))).))).))))))).((....((.....(((((((.....))))))).-...))..))------.......))... ( -16.40) >DroSec_CAF1 17359 93 - 1 ---AGCAAAUCAGGCGAAUUUGUUUU--GCACAUUUGCAUAAUUCGCACUAAGCGUGUCCAAUUAAAGUUUAAUUGGGUAUUCC--AC------UUGCUGGGCUUU ---........(((((((((.....(--(((....)))).))))))).))((((((..(((((((.....)))))))..)).((--(.------....))))))). ( -23.90) >DroSim_CAF1 5389 93 - 1 ---AGCAAAUCAGGCGAAUUUGUUUU--GCACAUUUGCGUAAUUCGCACUAAGCGUGUCCAAUUAAAGUUUAAUUGGGCAUUCC--AC------UUGCUGGGCUUU ---.((((((...(((((.....)))--))..))))))............(((((((((((((((.....))))))))))).((--(.------....))))))). ( -27.30) >DroEre_CAF1 6851 93 - 1 ---AGCAAAUCAAGCGAUUUUUUAUU--GCACAUUUGCGUAAUUCGCACUAAGCGUGUCCAAUUAAUGUUUAAUUGGGUAUUCC--AU------UUGCUGGGCCUU ---(((((((...((((....((((.--(((....))))))).)))).......((..(((((((.....)))))))..))...--))------)))))....... ( -21.90) >DroYak_CAF1 7133 99 - 1 ---AGCAAAUCAAGCGAAUUUUUAUU--GCACAUUUGCGUAAUUCGCACUAAGCGUGUCCAAUUAAAGUUUAAUUGGGUAUUGU--AUUGGCCAUUGCUGGGCCAU ---.((((.....(((((((.....(--(((....)))).)))))))........(..(((((((.....)))))))..)))))--..(((((.......))))). ( -27.20) >consensus ___AGCAAAUCAAGCGAAUUUUUAUU__GCACAUUUGCGUAAUUCGCACUAAGCGUGUCCAAUUAAAGUUUAAUUGGGUAUUCC__AC______UUGCUGGGCUUU ...(((((.....(((((((........(((....)))..))))))).......(((((((((((.....))))))))))).............)))))....... (-14.58 = -15.58 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:44 2006