Locus 2068

Sequence ID 3R_DroMel_CAF1
Location 5,882,776 – 5,882,869
Length 93
Max. P 0.825900
window3377

overview

Window 7

Location 5,882,776 – 5,882,869
Length 93
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 82.86
Mean single sequence MFE -22.70
Consensus MFE -16.24
Energy contribution -16.72
Covariance contribution 0.47
Combinations/Pair 1.14
Mean z-score -2.55
Structure conservation index 0.72
SVM decision value 0.70
SVM RNA-class probability 0.825900
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5882776 93 + 27905053
UACCC-----------AGAGCAAC---UGUCGUUGCUCCUCACAUGUAAUUGUUGUGACAUUAUUUAAUAUGUCAAAGCAAUGGAAAAUCCGGCACGACAAAAAAUA
.....-----------.(((((((---....)))))))...........((((((((((((........)))))...((...((.....)).)))))))))...... ( -24.70)
>DroPse_CAF1 9385 87 + 1
UACCA-----------AGG--AAC---UGUCGCCGCUUCUCACAUGUAAUUGUUGUGACAUUAUUUAAUAUGUCAAAGCAAUGGAGAAUCCUGCACGACACAA----
.....-----------...--...---(((((..(((((((.......((((((.((((((........)))))).)))))).)))))....)).)))))...---- ( -21.40)
>DroSim_CAF1 6525 91 + 1
UACCC-----------AGA--AAC---UGUCGUUGCUCCGCACAUGUAAUUGUUGUGACAUUAUUUAAUAUGUCAAAGCAAUGGAAAAUCCGGCACGACAAAAAAUA
.....-----------...--...---((((((.(((...........((((((.((((((........)))))).))))))((.....)))))))))))....... ( -23.40)
>DroEre_CAF1 6551 91 + 1
UACCC-----------AGG--AAC---UGUUGUUGCCCCUCACAUGUAAUUGUUGUGACAUUAUUUAAUAUGUCAAAGCAAUGGAAAAUCCGGCACGACAAAAAAUA
.....-----------...--...---((((((.(((...........((((((.((((((........)))))).))))))((.....)))))))))))....... ( -23.70)
>DroAna_CAF1 9160 102 + 1
GAGCCAGUCUCAAAAAAAA--AACGCUCGUCGCCGCUUCUCACAUGUAAUUGUUGUGACAUUAUUUAAUAUGUCAAAGCAAUGGGAAAUCCGGUAGGA---AAAAUA
((((...............--...))))...((((.((((((.......(((((.((((((........)))))).)))))))))))...))))....---...... ( -21.58)
>DroPer_CAF1 9621 87 + 1
UACCG-----------AAG--AAC---UGUCGCCGCUUCUCACAUGUAAUUGUUGUGACAUUAUUUAAUAUGUCAAAGCAAUGGAGAAUCCUGCACGACACAA----
.....-----------...--...---(((((..(((((((.......((((((.((((((........)))))).)))))).)))))....)).)))))...---- ( -21.40)
>consensus
UACCC___________AGA__AAC___UGUCGCCGCUCCUCACAUGUAAUUGUUGUGACAUUAUUUAAUAUGUCAAAGCAAUGGAAAAUCCGGCACGACAAAAAAUA
...........................(((((..(((...........((((((.((((((........)))))).))))))((.....))))).)))))....... (-16.24 = -16.72 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:30 2006