Locus 2067

Sequence ID 3R_DroMel_CAF1
Location 5,881,808 – 5,881,905
Length 97
Max. P 0.536977
window3376

overview

Window 6

Location 5,881,808 – 5,881,905
Length 97
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 81.43
Mean single sequence MFE -25.50
Consensus MFE -18.33
Energy contribution -18.25
Covariance contribution -0.08
Combinations/Pair 1.18
Mean z-score -1.26
Structure conservation index 0.72
SVM decision value 0.01
SVM RNA-class probability 0.536977
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5881808 97 + 27905053
AAUGCGAAUUGCUUUCGGCCAACGGUGCCCACAUCGUUUUUAUAGCCAGAACCGAGCUGUAUCUCGGCUAA---CGCGAUUGGAUUUGGACUAUCUAAUC
...(((((.....)))(((((((((((....)))))))..(((((((......).))))))....))))..---.))((((((((.......)))))))) ( -27.20)
>DroPse_CAF1 7740 99 + 1
UGUUUGCAUUGGUUUCAGCCAACGGUGCGAACAUCGUU-UUAUAGCCAAAGCCGAACGACUUUUGAGUGAAAUUUAAUGUCGGAUUUGGUUUAUCUAAUC
(((((((((((((....))))...))))))))).....-...(((...(((((((.((((..((((((...)))))).))))...)))))))..)))... ( -26.30)
>DroSim_CAF1 5662 97 + 1
AAUGCGAAUUGCUUUCGGCCAACGGUGCCCACAUCGUUUUUAUAGCCAGAACCGAGCUGUAUCUCGGCUAA---UGCGAUCGGAUUUGGACUAUCUAAUC
.((.(((.((((....(((((((((((....)))))))..(((((((......).))))))....))))..---.))))))).))((((.....)))).. ( -25.50)
>DroEre_CAF1 5669 97 + 1
AAUGCGAAUUGCUUUCGGCCAACGGUGCCCACAUCGCUUUUAUAGCCAUAACCGAGCUGUAUCUCGGCUAA---UACGAUCGGAUUUGGACUAUCUAAUC
...((((...((..(((.....))).)).....))))....(((((((...((((..(((((........)---)))).))))...))).))))...... ( -21.40)
>DroYak_CAF1 5614 97 + 1
AAUGCGAAUUGCUUUCGGCCAACGGUGCGCACAUCGUUUUUAUAGCCAGAACCGAGCUGUAUUUCGGCUAA---UACGAUCGGAUUUGGACUAUCUAAUC
....((((.....))))...(((((((....)))))))...(((((((((.((((..((((((......))---)))).)))).))))).))))...... ( -27.00)
>DroPer_CAF1 7926 99 + 1
UGUUUGCAUUGGUUUCAUCCAACGGUGCAAACAUCGUU-UUAUAGCCAAAGCCGAACGACUUUUGAGUGAAAUUUAAUGUCGGAUUUGGUUUAUCUAAUC
(((((((((((...........))))))))))).....-...(((...(((((((.((((..((((((...)))))).))))...)))))))..)))... ( -25.60)
>consensus
AAUGCGAAUUGCUUUCGGCCAACGGUGCCCACAUCGUUUUUAUAGCCAGAACCGAGCUGUAUCUCGGCUAA___UACGAUCGGAUUUGGACUAUCUAAUC
....((((.....))))...(((((((....)))))))...(((((((((.((((((((.....))))...........)))).))))).))))...... (-18.33 = -18.25 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:29 2006