Locus 2064

Sequence ID 3R_DroMel_CAF1
Location 5,874,452 – 5,874,563
Length 111
Max. P 0.914960
window3373

overview

Window 3

Location 5,874,452 – 5,874,563
Length 111
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 94.58
Mean single sequence MFE -30.17
Consensus MFE -29.67
Energy contribution -29.34
Covariance contribution -0.33
Combinations/Pair 1.08
Mean z-score -1.95
Structure conservation index 0.98
SVM decision value 1.10
SVM RNA-class probability 0.914960
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5874452 111 - 27905053
UAUUGAGCAUCACUAGCAAGAGCGGAUGUAAUCGGGAGAGCAAUAUCAAUUGGAACUGGCCCUUAUUGGACUAUGUUUUAAUUUCACUUUGUUCUGCUUUUCUGGUUAUUC
......(((((....((....)).)))))((((((((((((((((..((((((((((((.((.....)).))).)))))))))......)))..))))))))))))).... ( -29.90)
>DroSec_CAF1 24477 110 - 1
-UUUGAGCAUCACUAGCAAGAGCGGAUGUAGUCGGGAGAGCAAUCUCAAUUGAAACUGGCCCUUAUUGGACUAAGUUUUGAUUUCACUUUGUUUUGCUUUUCUGGUUAUUC
-..........(((((.(((((((((...(((.((((((....))))(((..(((((((.((.....)).)).)))))..))))))))....))))))))))))))..... ( -29.80)
>DroSim_CAF1 20796 110 - 1
-UUUGAGCAUCACUAGCCAGAGCGGAUGUAAUCGGGAGAGCAAUCUCAAUUGAAACUGGCCCUUAUUGGACUAAGUUUUGAUUUCACUUUGUUUUGCUUUUCUGGUUAUUC
-.....(((((....((....)).)))))((((((((((((((...((((..(((((((.((.....)).)).)))))..)).......))..)))))))))))))).... ( -30.81)
>consensus
_UUUGAGCAUCACUAGCAAGAGCGGAUGUAAUCGGGAGAGCAAUCUCAAUUGAAACUGGCCCUUAUUGGACUAAGUUUUGAUUUCACUUUGUUUUGCUUUUCUGGUUAUUC
......(((((....((....)).)))))((((((((((((((...(((((((((((((.((.....)).))).)))))))).......))..)))))))))))))).... (-29.67 = -29.34 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:26 2006