Locus 2061

Sequence ID 3R_DroMel_CAF1
Location 5,859,879 – 5,859,975
Length 96
Max. P 0.572968
window3370

overview

Window 0

Location 5,859,879 – 5,859,975
Length 96
Sequences 3
Columns 106
Reading direction forward
Mean pairwise identity 79.55
Mean single sequence MFE -32.00
Consensus MFE -18.52
Energy contribution -17.87
Covariance contribution -0.66
Combinations/Pair 1.22
Mean z-score -2.03
Structure conservation index 0.58
SVM decision value 0.08
SVM RNA-class probability 0.572968
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5859879 96 + 27905053
UGGCCAUA----UUUGUGCGUCUGGCUU--G---GCGCUACUUUGUGGUUAAUAAAUGUGGCCAUUAUAAGCCUUGUUCG-GGCGUGGGCGUGGCAUUUAUCCAUA
((((((((----((((((((((......--)---)))).(((....)))..)))))))))))))......(((.((((((-....)))))).)))........... ( -34.30)
>DroYak_CAF1 17639 96 + 1
UGGCCGUA----UUUGUGCGUCUGUCUU--G---UCGCUACUUUGUGGUCAAUAAAUGUGGUCAUUAUAAGCCUUGUUCG-GGCGUGGGUGUGGCAUUUAUCCACA
((((((((----((((((((.(......--)---.))).(((....)))..)))))))))))))......((((.....)-)))(((((((.......))))))). ( -29.30)
>DroAna_CAF1 17269 102 + 1
UGGCUUUUUCACUCUGUGCCAGUGUCUCUCGCAACUGCUACUUUGUGGUCAAUAAAUGUGGCCAUAAUCAGCCUUGUUCGGGGCGUGGGCGUGGCAUUUAU----A
.............(..((((..((((((..((((..(((...(((((((((.......)))))))))..))).))))..))))))..))))..).......----. ( -32.40)
>consensus
UGGCCAUA____UUUGUGCGUCUGUCUU__G___CCGCUACUUUGUGGUCAAUAAAUGUGGCCAUUAUAAGCCUUGUUCG_GGCGUGGGCGUGGCAUUUAUCCA_A
..((((........)).)).................(((((...(((((((.......))))))).....(((((((.....))).)))))))))........... (-18.52 = -17.87 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:23 2006