| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,856,730 – 5,856,822 |
| Length | 92 |
| Max. P | 0.629227 |
| Location | 5,856,730 – 5,856,822 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 76.28 |
| Mean single sequence MFE | -24.67 |
| Consensus MFE | -8.35 |
| Energy contribution | -8.60 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.34 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5856730 92 - 27905053 CAU--UUUCAUGGCCAACUUGAAG-ACUAAG-GUGGCUGGGGAGGCAAUGCACUAAAAAUAGGCGCAUUGCCUUU-GCGAGAGACACAUUUUCCUAA ..(--((((..(((((.((((...-..))))-.)))))(.(((((((((((.(((....)))..)))))))))))-.)))))).............. ( -32.40) >DroVir_CAF1 17421 80 - 1 CAUGGAUUCAUGGCCAAGCA---G-CCCAAA------------GCCAAUGCACUAAAAAUAGGCGCGUUGCCUUU-GCCAGAGACAAACAUUUUUAA ..(((......(((......---)-))((((------------(.((((((.(((....)))..)))))).))))-))))................. ( -18.80) >DroGri_CAF1 20803 92 - 1 CAUGGAUUCAUGGCCAACU--C-GCCCCAAAGCUGCCA--AGAGCCAAUGCACUAAAAAUAGGCGCAUUGCCUUUAGCAAGAGACAAACAUUUUUAA ((((....)))).....((--(-((......))(((..--((((.((((((.(((....)))..)))))).)))).))).))).............. ( -19.80) >DroYak_CAF1 14513 92 - 1 CAU--UUUCAUGGCCAACUUGAAG-ACCGAG-GUGGCUGCGGAGCCAAUGCACUAAAAAUAGGCGCAUUGCCUUU-GCGAGCGACACAUUUUCCUAA ...--.(((..(((((.((((...-..))))-.)))))((((((.((((((.(((....)))..)))))).))))-)))))................ ( -28.60) >DroMoj_CAF1 18116 93 - 1 CAUGGAUUCAUGGCCAAGCACA-GCCCCAAAGCUGGCA--AGUGCCAAUGCACUAAAAAUAGGCGCAUUGCCUUU-GCCAGAGACAAACAUUUUUAA ..(((......(((........-))))))...((((((--((.((.(((((.(((....)))..))))))).)))-)))))................ ( -25.10) >DroAna_CAF1 14152 83 - 1 CGU--UUUCAUGGCCAACCCGAAG-CCGA----------CAAAGCCAAUGCACUAAAAAUAGGUGCAUUGCCUUU-GCUAGAGACACAUUUUCUUAA .((--((((.((((.........)-))).----------(((((.(((((((((.......))))))))).))))-)...)))).)).......... ( -23.30) >consensus CAU__AUUCAUGGCCAACCAGA_G_CCCAAA__UGGC___AGAGCCAAUGCACUAAAAAUAGGCGCAUUGCCUUU_GCCAGAGACAAACAUUCUUAA ........................................((((.((((((.((.......)).)))))).))))...................... ( -8.35 = -8.60 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:22 2006