Locus 2059

Sequence ID 3R_DroMel_CAF1
Location 5,853,313 – 5,853,406
Length 93
Max. P 0.778279
window3368

overview

Window 8

Location 5,853,313 – 5,853,406
Length 93
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 90.21
Mean single sequence MFE -24.87
Consensus MFE -20.81
Energy contribution -21.53
Covariance contribution 0.72
Combinations/Pair 1.09
Mean z-score -2.05
Structure conservation index 0.84
SVM decision value 0.55
SVM RNA-class probability 0.778279
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5853313 93 + 27905053
---GAAAACCAAUUUAUAAAUGUCUUUGGGCUUAUGAUGGAUUUCAGAUUGUGUCUGUGAGUCGCGUGGGCCACCAAGACAAC----GAACUAUGUAAAA
---.................((((((.(((((((((...((((((((((...))))).))))).)))))))).).))))))..----............. ( -25.40)
>DroSec_CAF1 11014 93 + 1
---GAAAACCAAUUUAUAAAUGUCUUUGGGCUUAUGAUGGAUUUCAGAUUGUAUCUGUGAGUCGCGUGGGCCAACAAGACAAC----GAACUAUGCCAAA
---.................((((((..((((((((...((((((((((...))))).))))).))))))))...))))))..----............. ( -24.80)
>DroSim_CAF1 8693 93 + 1
---GAAAACCAAUUUAUAAAUGUCUCUGGGCUUAUGAUGGAUUUCAGAUUGUGUCUGUGAGUCGCGUGGGCCACCAAGACAAC----GAACUAUGCAAAA
---.................(((((..(((((((((...((((((((((...))))).))))).)))))))).)..)))))..----............. ( -24.00)
>DroEre_CAF1 11328 93 + 1
---GAAAACCAAUUUAUAAAUGUCUUUGGGCUUAUGAUGGAUUUCAGAUUGUGUCUGUGAGUCGCGUGGGCCACCAAGACAAA----GAACUAUGCAAAA
---.................((((((.(((((((((...((((((((((...))))).))))).)))))))).).))))))..----............. ( -25.40)
>DroYak_CAF1 10963 93 + 1
---GAAAACCAAUUUAUAAUUGUCUUGGGGCUUAUGAUGGAUUUCAGAUUGUGUCUGUGAGUCGCGUGGGCCACCAAGACAAA----GAACUAUGCAAAA
---................(((((((((((((((((...((((((((((...))))).))))).)))))))).))))))))).----............. ( -32.80)
>DroAna_CAF1 10802 97 + 1
CAAGAAAACCAAUUUAUAAAUGUCUAUGGGCUUAUGAUGGAUUUCACGUU--CUCAGUGAGUCGCGUGGGU-AUGAAAACAACAACAGAAUUAUGCAAAA
...................((..((((((((((((...((((.....)))--)...))))))).)))))..-)).......................... ( -16.80)
>consensus
___GAAAACCAAUUUAUAAAUGUCUUUGGGCUUAUGAUGGAUUUCAGAUUGUGUCUGUGAGUCGCGUGGGCCACCAAGACAAC____GAACUAUGCAAAA
....................((((((..((((((((...(((((((((.....)))).))))).))))))))...))))))................... (-20.81 = -21.53 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:21 2006