Locus 2058

Sequence ID 3R_DroMel_CAF1
Location 5,848,517 – 5,848,613
Length 96
Max. P 0.974113
window3367

overview

Window 7

Location 5,848,517 – 5,848,613
Length 96
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 78.91
Mean single sequence MFE -23.42
Consensus MFE -17.92
Energy contribution -17.52
Covariance contribution -0.40
Combinations/Pair 1.12
Mean z-score -2.17
Structure conservation index 0.77
SVM decision value 1.72
SVM RNA-class probability 0.974113
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5848517 96 - 27905053
UCUCGGGUUCAAUAAAGUCGAGGCAACGGCUUCGAAUUUGGAUCAAGAUUAUUUUUUAGAAAGGAUUUUAUAAACAAUUUAUUUUUGUGGGUUUCC---------
(((..(((((((.....(((((((....)))))))..))))))).)))..............(((..((....((((.......)))).))..)))--------- ( -20.40)
>DroSec_CAF1 6309 102 - 1
UCUCGCGUUCAAUAAAGUCGAGGCAACUGCCUCGAAUUUGGACCAAGAUUAAUUUUUAGAAAGGAUUUUAUAUA---UUUACAUUUAUGGGUUUCAAAUCUUUUC
(((.(.((((((.....(((((((....)))))))..))))))).)))..........((((((((((..((((---........))))......)))))))))) ( -26.60)
>DroSim_CAF1 3964 93 - 1
UCUUGCGUUCAAUAAAGUCGAGGCAACUGCUUCGAAUUUGGACCAAGAUUAAUUUUUAGAAAGGAUUUUAUAUA---UUUACUUUUAUGGGUUUCA---------
(((((.((((((.....(((((((....)))))))..)))))))))))..............(((.((((((..---........)))))).))).--------- ( -23.30)
>DroEre_CAF1 6492 86 - 1
UCUGGUGUUCAAUAAAGUCGAGGCAACGGCCUCGAAUUUGGACCAAGAUUGAGUUU--GCAAGGAUUUCAUAUA---UUGACG-----GGCUUUAA---------
(((.(.((((((.....(((((((....)))))))..))))))).)))..((((((--((((............---))).))-----)))))...--------- ( -24.60)
>DroYak_CAF1 6157 87 - 1
UCUGGUGUUCAAUAAAGUCGAGGCAAUGGCUUCGAAUUUGGACCAAGAUGGAAUUU--GCAAGGAUUUGACAUA---UGAACA----UGGGUUUAA---------
.((.(((((((.((((.(((((((....))))))).))))..((.....)).....--................---))))))----).)).....--------- ( -22.20)
>consensus
UCUCGCGUUCAAUAAAGUCGAGGCAACGGCUUCGAAUUUGGACCAAGAUUAAUUUUUAGAAAGGAUUUUAUAUA___UUUACAUUU_UGGGUUUCA_________
(((.(.((((((.....(((((((....)))))))..))))))).)))......................................................... (-17.92 = -17.52 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:20 2006