| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,842,811 – 5,842,921 |
| Length | 110 |
| Max. P | 0.645698 |
| Location | 5,842,811 – 5,842,921 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 88.03 |
| Mean single sequence MFE | -26.36 |
| Consensus MFE | -17.59 |
| Energy contribution | -17.90 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.645698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5842811 110 + 27905053 AGCUUAGCGAAUAGUACAUUAGUAACUGGUCGACUGGCUUAGCCGAAUCCAAAUUCUUAAACAUCUGUUAGUUAAAUCGGAGCAUAUAUUAAAGUAAAAUCGCUGAGCUU ((((((((((....(((.((((((....((...(((..(((((.((((....))))...(((....))).)))))..))).))...)))))).)))...)))))))))). ( -27.80) >DroSec_CAF1 808 110 + 1 AGCUUAGCGAAUAGUACAUUAGUAACUGGCCGACUGGCUCAGCCGAAUUCAAAUUCUUAAACAUCUAUUAGUUCAAUCGGAGCAUAUAUUAAAGUAAAAUCGCUGAGUUU ((((((((((....(((.((((((.((((((....))).)))..((((....))))..............((((.....))))...)))))).)))...)))))))))). ( -28.50) >DroEre_CAF1 809 110 + 1 AGCUUAGCGAAUAGUACAUUAGUAACUGGCAGACUGGCUUAGUCAAAUCCAAAUGCUUAAACAUCUAUUGGUUAAAUCGCAGCUUAUAUUGAAGCCAAAUCGCCGAGUUU ((((..((((.((((((....)).))))......(((((...((((.......(((((((.((.....)).))))...))).......)))))))))..))))..)))). ( -22.14) >DroYak_CAF1 495 110 + 1 AGCUUAGCGAAUAGUACAUUAGUAACUGGCAAUCUGGCUUAUUCAAAUCCAAAUUCUUAAACAUCUAUUAGUUAAAUCGCAGCGGAUAUUGAAGCCUCAUCGCUGAGCUU ((((((((((.((((((....)).)))).......((((...((((((((.........(((........)))..........)))).))))))))...)))))))))). ( -27.01) >consensus AGCUUAGCGAAUAGUACAUUAGUAACUGGCAGACUGGCUUAGCCAAAUCCAAAUUCUUAAACAUCUAUUAGUUAAAUCGCAGCAUAUAUUAAAGCAAAAUCGCUGAGCUU ((((((((((....(((.((((((..(((.....((((...))))...)))...................(((.......)))...)))))).)))...)))))))))). (-17.59 = -17.90 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:19 2006