Locus 2056

Sequence ID 3R_DroMel_CAF1
Location 5,840,635 – 5,840,746
Length 111
Max. P 0.741666
window3365

overview

Window 5

Location 5,840,635 – 5,840,746
Length 111
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 85.17
Mean single sequence MFE -27.27
Consensus MFE -24.87
Energy contribution -25.53
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.34
Structure conservation index 0.91
SVM decision value 0.45
SVM RNA-class probability 0.741666
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5840635 111 - 27905053
UGCCCGCCAAUCUGCCCACAGAUACGGAGACCGAGGUGGGUCAUAUUUAACUAUUUUCUCUCUUGGCGAUGGGGAGACUAACCUUCUCAUUAUUCUCAUUUAUUUUCCUUG
.(((((((.(((((....))))).(((...))).)))))))..........................(((((((((......))))))))).................... ( -28.30)
>DroSim_CAF1 1 95 - 1
UGCCCGCCAAUCUGCCCACAGAUACGGAGACCGAGGUGGGUCAUAUUUAACUAUUAUCUCUCUUGGCGAUGGGGAGACUAACCUUCUCAUUAUUU----------------
.(((((((.(((((....))))).(((...))).)))))))..........................(((((((((......)))))))))....---------------- ( -28.30)
>DroYak_CAF1 1 95 - 1
UGCCGGCCAAUCUGCCCACAGAUACGGAGACCGAGGUGGGUUCUAUUUAACUAUUGUGUCUCUUGGCGAUUGGGAGACUAACCUUCUCAUUAUUC----------------
......((((((.(((...(((((((....)...(((((...........)))))))))))...)))))))))((((.......)))).......---------------- ( -25.20)
>consensus
UGCCCGCCAAUCUGCCCACAGAUACGGAGACCGAGGUGGGUCAUAUUUAACUAUUAUCUCUCUUGGCGAUGGGGAGACUAACCUUCUCAUUAUUC________________
.(((((((.(((((....))))).(((...))).)))))))..........................(((((((((......))))))))).................... (-24.87 = -25.53 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:18 2006