| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,839,690 – 5,839,799 |
| Length | 109 |
| Max. P | 0.575339 |
| Location | 5,839,690 – 5,839,799 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 66.57 |
| Mean single sequence MFE | -26.73 |
| Consensus MFE | -14.83 |
| Energy contribution | -15.73 |
| Covariance contribution | 0.90 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575339 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5839690 109 + 27905053 CAGCUGGGAUUUAAUAUGGUCCAUUGUGCCGGCAAAGCUGCUGGCUUGGAUUUCCUUCAACUUGCUGUUGAGCUCUUUAUUUGGCUUUCUU-----------UCCACAUCCUCAUCUACA .((.((((((.......((((((....(((((((....))))))).))))))....(((((.....)))))(((........)))......-----------.....)))).)).))... ( -28.10) >DroVir_CAF1 747 115 + 1 CAGCUGUGAUUUGAUAUGAUCCAUUGUACCCGCAAAGCUACUGGCACCAAUUUCCUUAAGCUUGCUGCUCAUUUGUGUGUU-----GGUUUGUGAAUCAGCAUCAGCAUCGUCAUCUAUA .((.(((((((((((.((((.(((...(((((((((((.....)).............(((.....)))..))))))....-----)))..))).))))..))))).)))).)).))... ( -23.50) >DroWil_CAF1 5425 100 + 1 UAGCUGCGAUUUUAUAUGAUCCAUGGUGCCGGCAAAGCUGCUGGCUUGAAUCUCUUUGAGUUUAUUGCUCAAUUCUUUGUU-----AUCCU-----------GCGGCA----CAUCUACA ..((((((.........(((.((....(((((((....))))))).)).)))...((((((.....)))))).........-----....)-----------))))).----........ ( -28.60) >consensus CAGCUGCGAUUUAAUAUGAUCCAUUGUGCCGGCAAAGCUGCUGGCUUGAAUUUCCUUAAGCUUGCUGCUCAAUUCUUUGUU_____AUCUU___________UCAGCAUC_UCAUCUACA ..(((((((((......))))......(((((((....)))))))...........(((((.....)))))...............................)))))............. (-14.83 = -15.73 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:17 2006