| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,817,542 – 5,817,638 |
| Length | 96 |
| Max. P | 0.733270 |
| Location | 5,817,542 – 5,817,638 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 73.52 |
| Mean single sequence MFE | -31.08 |
| Consensus MFE | -16.64 |
| Energy contribution | -16.97 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.733270 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5817542 96 + 27905053 UUAGAAAUCUCA---CGGCA--GCUGGCGGCCGGAUCCGGAUGAAGAUUCGGAUCU--GGCGCAGCGAAUGCUGGUUCAGCGCGGUAUGUUGCAUCCACUAAA ((((........---..((.--((((((.(((((((((((((....))))))))))--))).((((....))))).)))))))((.(((...))))).)))). ( -38.70) >DroVir_CAF1 106298 85 + 1 UUAGCUAUCUC-AUCUGGCA--GCUGAGAGUCGC------------AUCCAUUUC---GGCUCAGCAGCUGCUAGUACAGCGCGGUAUGUUGCAUCCACUAAA ...(((.....-..((((((--((((.((((((.------------(.....).)---)))))..))))))))))...)))((((....)))).......... ( -28.60) >DroPse_CAF1 118032 87 + 1 UUAGAAAUCUCA-U-CGGCAGAGCUGGCGGUCGGAGCUU------------GUUCC--GACGCAGCGAUUGCUGGUACAGCGCGGUAUGUUGCAUCCACUAAA ((((.......(-(-((((((.((((.((.((((((...------------.))))--))))))))..)))))))).....((((....)))).....)))). ( -29.90) >DroEre_CAF1 106102 96 + 1 UUAGAAAUCUCA---CGGCA--GCUGGCGGCCGGAUUCGGAUGCAGAUUCGGGUCC--GGCGCAGCGAAUGCUGGUUCAGCGCGGUAUGUUGCAUCCACUAAA ((((........---..((.--((((((.(((((((((((((....))))))))))--))).((((....))))).)))))))((.(((...))))).)))). ( -37.50) >DroMoj_CAF1 105256 90 + 1 AUAAAUAUCUCAAUCUGGCAG-GCUGAAAGUCGG-----------GAUUCGGUUCCCCCACCCAGUACCUGCUAGUACAGCGCGGUAUGUUGCAUCCACUA-A ..............(((((((-((((......((-----------((......)))).....)))..))))))))......((((....))))........-. ( -21.90) >DroPer_CAF1 117899 87 + 1 UUAGAAAUCUCA-U-CGGCAGAGCUGGCGGUCGGAGCUU------------GUUCC--GACGCAGCGAUUGCUGGUACAGCGCGGUAUGUUGCAUCCACUAAA ((((.......(-(-((((((.((((.((.((((((...------------.))))--))))))))..)))))))).....((((....)))).....)))). ( -29.90) >consensus UUAGAAAUCUCA_U_CGGCA__GCUGGCGGUCGGA_C_________AUUCGGUUCC__GACGCAGCGAAUGCUGGUACAGCGCGGUAUGUUGCAUCCACUAAA ((((...........(((((..((((...((((((((..............)))))..))).))))...))))).......((((....)))).....)))). (-16.64 = -16.97 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:11 2006