| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,813,446 – 5,813,557 |
| Length | 111 |
| Max. P | 0.832975 |
| Location | 5,813,446 – 5,813,557 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.82 |
| Mean single sequence MFE | -45.35 |
| Consensus MFE | -28.70 |
| Energy contribution | -30.93 |
| Covariance contribution | 2.23 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.832975 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5813446 111 + 27905053 GAAACGCGACCAGUGGUGCACCCAGUGCCGGUGGAAGAAGGCGUGCAGUCGCUUCGGCGACUGAAAGCGACAGAAGUCGUCGACGGAGGCGGC---AAACCA------GGCGUCGGCGCA .....(((.(((.(((..(.....)..))).))).....(((((.(((((((....)))))))............((((((......))))))---......------.)))))..))). ( -48.40) >DroVir_CAF1 102072 111 + 1 GCGACGCGAUCAAUGGUGCACUCAGUGCCGAUGGAAGAAGGCUUGCAGUCGCUUUGGUGACUGAAAGCGACAGAAAUCGUCGACGGAGGCAGC---AGCCCA------UGCGUCGGCGAC .(((((((.(((.(((..(.....)..))).))).....((((.((.(((((((((....)..)))))))).......(((......))).))---))))..------)))))))..... ( -44.00) >DroGri_CAF1 183009 105 + 1 CAGACGGGAUCAGUGGUGCACCCAGUGCAAGUGGAAGAAGGCCUGCAGUCGCUUUGGCGACUGAAAGCGACUGAAAGCGUCGACGGCGGCAG---------A------GGCGUCGACGAC .........(((((..(((((...)))))...........((...(((((((....)))))))...)).)))))...((((((((.(.....---------.------).)))))))).. ( -41.60) >DroWil_CAF1 143521 117 + 1 GCAACGCGAUAAAUGGUGCACCCAAUGCCGAUGGAAGAAGGCUUGCAGCCGCUUUGGCGACUGAAAGCGACAGAAAUCGUCGACGGAGGCCAC---CACCAAUCAGUCGGCGUCAUUGUG ....((((((...(((.....)))((((((((.((.....((((.(((.(((....))).))).))))((((....).)))...((.((...)---).))..)).)))))))).)))))) ( -35.70) >DroMoj_CAF1 100748 114 + 1 ACGCCGCGACCAAUGGUGCACUCAAUGCCGAUGGAAGAAGGCUUGCAGUCGCUUCGGCGACUGAAAACGACAGAAAGCGUCGACCGAAGCGGCUCAGGCCCA------GGCGUCGGCGAU .(((((((.(((.((((.........)))).))).....((((((.(((((((((((((((.................)))).)))))))))))))))))..------..)).))))).. ( -53.63) >DroAna_CAF1 57387 111 + 1 UAAGCGUGACCAGUGGUGCACUCAGUGCCGAUGGAAGAAGGCAUGCAGUCGCUUCGGCGACUGAAAGCGGCAGAAGUCGUCGACGGAGGCGGC---AAACCA------GGCGUCGGCGCA ...(.((((((...))).))).).(((((((((.......((...(((((((....)))))))...))((.....((((((......))))))---...)).------..))))))))). ( -48.80) >consensus GAAACGCGACCAAUGGUGCACCCAGUGCCGAUGGAAGAAGGCUUGCAGUCGCUUCGGCGACUGAAAGCGACAGAAAUCGUCGACGGAGGCGGC___AACCCA______GGCGUCGGCGAA .........(((.((((((.....)))))).)))......((...(((((((....)))))))...)).........((((((((.........................)))))))).. (-28.70 = -30.93 + 2.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:07 2006