| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,806,464 – 5,806,568 |
| Length | 104 |
| Max. P | 0.703693 |
| Location | 5,806,464 – 5,806,568 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 76.35 |
| Mean single sequence MFE | -34.22 |
| Consensus MFE | -14.66 |
| Energy contribution | -15.38 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.703693 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5806464 104 - 27905053 UUCGUUUUAACUUGCUGCAAUUAGUAGGCGGUCGUAAUUCGUUUGCGGCUAGACUUCUGGG-GGC------AGGAUAUGCCUUAUAUCCUGGCUCAUAAAUAAGGGUCUGC ..........(((((((....))))))).((((((((.....))))))))(((((..((((-(.(------((((((((...))))))))).))).....))..))))).. ( -33.50) >DroVir_CAF1 93910 96 - 1 UUCGUUUUAACUCGGCGCAAUUAGUGGGCG-CCAUAAUUCGUUUGCGGCCAGCGAACGGAGCG-------CAGGAUAUGGCGCAUAUCCUGC-UCAUAAAUAUUA------ ..........((((((((.........)))-))......(((((((.....)))))))))).(-------(((((((((...))))))))))-............------ ( -36.30) >DroPse_CAF1 105821 110 - 1 UUCGUUUUAACUUGGCGCAAUUAGUGGGCCACCAUAAUUCGUUUGCGGCCAGCCUACAGAGCGGCCGUGGCAGGAUGCUGGGCAUAUCCUGCCACAUAAAUAACACUC-AC ..((..(((...((((.((.....)).))))...)))..)).....((((.(((....).))))))(((((((((((.......))))))))))).............-.. ( -38.00) >DroWil_CAF1 135570 103 - 1 UUCGUUUUAACUUUGUGCAAUUAGUGGGAGACCAUAAUUCGUUUGCGGCCAGCGAACUGAG-G-------CAGGAUUUGGGGCAUAUCCUGAGCCAUAAAUACACAUAUAU .............((((......((((....)))).....((((((.....))))))...(-(-------((((((.((...)).)))))..))).......))))..... ( -26.10) >DroMoj_CAF1 92966 96 - 1 UUCGUUUUAACUCGGCGCAAUUAGUGGGCG-CCAUAAUUCGUUUGUGGCCAGUGAGCAGAGCG-------GAGGAUAUGGCGCAUAUCCUGC-UCAUAAAUAUUA------ ..........((((((.((.....)).))(-((((((.....)))))))...))))..((((.-------.((((((((...))))))))))-))..........------ ( -29.20) >DroPer_CAF1 105082 110 - 1 UUCGUUUUAACUUGGCGCAAUUAGUGGGCGACCAUAAUUCGUUUGUGGCCAGCCUACAGAGCGGCCGUGGCAGGAUGCUGGGCAUAUCCUGCCACAUAAAUAACACAC-AC ...((.(((....(((((..((.((((((..((((((.....))))))...)))))).)))).)))(((((((((((.......))))))))))).....))).))..-.. ( -42.20) >consensus UUCGUUUUAACUUGGCGCAAUUAGUGGGCGACCAUAAUUCGUUUGCGGCCAGCCAACAGAGCG_______CAGGAUAUGGCGCAUAUCCUGCCUCAUAAAUAACA_UC_AC ..((((((..((.(.(((((...((((....)))).......))))).).)).....)))))).......((((((((.....)))))))).................... (-14.66 = -15.38 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:03 2006