| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,792,071 – 5,792,165 |
| Length | 94 |
| Max. P | 0.853323 |
| Location | 5,792,071 – 5,792,165 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 81.36 |
| Mean single sequence MFE | -19.20 |
| Consensus MFE | -12.07 |
| Energy contribution | -11.97 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.853323 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5792071 94 + 27905053 CAAGACUAUUAUUCUUGAUUAUUAGCGGUUUUUUAAAGGGUUUUUAUUUUCUCAGUGAGCUCGCUGCUUACUUCCCCCGUUUUAUUUUUGCCUA (((((.......)))))......(((((.........(((..........)))(((((((.....)))))))....)))))............. ( -16.70) >DroSec_CAF1 83855 89 + 1 CAAGACUAUUAUUCUUGAUUAUUAGGGGCUUAUUAAAGAGUUUUU---UU--CAGUGAGCUCGCUGCUUACUUCCCCCGUUUUAUUUUUGCCUA (((((.......))))).......((((.........(((.....---))--)(((((((.....)))))))..))))................ ( -19.60) >DroSim_CAF1 84595 75 + 1 CAAGACU----------------AGGGGUUUAUUAGAGGGUUUUU---UUCUCAGUGAGCUCGCUGCUUACUUCCCCCGUUUUAUUUUUGCCUA .(((((.----------------.((((.......(((((.....---)))))(((((((.....))))))).)))).)))))........... ( -21.30) >consensus CAAGACUAUUAUUCUUGAUUAUUAGGGGUUUAUUAAAGGGUUUUU___UUCUCAGUGAGCUCGCUGCUUACUUCCCCCGUUUUAUUUUUGCCUA ........................(((((((....)))...............(((((((.....)))))))..))))................ (-12.07 = -11.97 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:58 2006