Locus 2041

Sequence ID 3R_DroMel_CAF1
Location 5,791,320 – 5,791,424
Length 104
Max. P 0.929186
window3345

overview

Window 5

Location 5,791,320 – 5,791,424
Length 104
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 88.82
Mean single sequence MFE -30.95
Consensus MFE -28.39
Energy contribution -29.03
Covariance contribution 0.64
Combinations/Pair 1.12
Mean z-score -1.70
Structure conservation index 0.92
SVM decision value 1.20
SVM RNA-class probability 0.929186
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5791320 104 - 27905053
CUGCCAGAUAAACGGAGCUGGGC-CGGCAACAUUGUGGCCAUAACCGGCGGCUAAUUCGUGCUUUAAUGCACACAUCACGAUGGAAUUUGGCAAACCUCUUUCUC
.((((((((.......((((...-))))..((((((((((......))).........((((......))))....)))))))..))))))))............ ( -32.90)
>DroSec_CAF1 83107 104 - 1
CUGCCAGAUAAACGGAGCUGGGC-CGGCAACAUUGUGGCCAUAACCGGCGGCUAAUUCGUGCUUUAAUGCACACAUCACGAUGGAAUUUGGCAAACCUCUUUCUC
.((((((((.......((((...-))))..((((((((((......))).........((((......))))....)))))))..))))))))............ ( -32.90)
>DroSim_CAF1 83842 104 - 1
CUGCCAGAUAAACGGAGCUGGGC-CGGCAACAUUGUGGCCAUAACCGGCGGCUAAUUCGUGCUUUAAUGCACACAUCACGAUGGAAUUUGGCAAACCUCUUUCUC
.((((((((.......((((...-))))..((((((((((......))).........((((......))))....)))))))..))))))))............ ( -32.90)
>DroEre_CAF1 79891 104 - 1
CUGCCAGAUAAACGGAGCUGGGC-CAGCAACAUUGUGGCCAUAACCGGGGGCUAAUUCGUGCUUUAAUGCACACAUCACGAUGGAAUUUGGCAAACCUCUUUCUC
.((((((((.......((((...-))))..((((((((((.........)))......((((......))))....)))))))..))))))))............ ( -32.00)
>DroYak_CAF1 68573 105 - 1
CUGCCAGAUAAACGGAGCUUGGUAAAGCAACAUUGUGGCCAUAACCGGCGGCUAAUUCGUGCUUUAAUGCACACAUCACGAUGGAAUUUGGCAAACCUCUAUCUC
.((((((((.......((((....))))..((((((((((......))).........((((......))))....)))))))..))))))))............ ( -33.90)
>DroAna_CAF1 35532 81 - 1
CUACGAGAUA------------C-UGGCAACAUUGUGGCUAUAACCGGCGGCUAAUUCGUGCUUUAAUGCACACAUCACGAUGGAAUUUGGCAG-----------
..........------------(-((.(((((((((((((......))).........((((......))))....)))))))....))).)))----------- ( -21.10)
>consensus
CUGCCAGAUAAACGGAGCUGGGC_CGGCAACAUUGUGGCCAUAACCGGCGGCUAAUUCGUGCUUUAAUGCACACAUCACGAUGGAAUUUGGCAAACCUCUUUCUC
.((((((((.......((((....))))..((((((((((......))).........((((......))))....)))))))..))))))))............ (-28.39 = -29.03 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:57 2006