| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,791,062 – 5,791,187 |
| Length | 125 |
| Max. P | 0.966796 |
| Location | 5,791,062 – 5,791,172 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 78.54 |
| Mean single sequence MFE | -23.18 |
| Consensus MFE | -19.27 |
| Energy contribution | -19.68 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.966796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5791062 110 + 27905053 CCAUGGCU--------CCGGCCUCAUAAUUCCCUCCGCUUUCCUCCUCUCCCCUUUCCAUCGUUCAGGCGUUUUUAAUGAUGCGUCAGAAUAUUGUUUACGCAUCAUUUUACAUGUCG ....(((.--------...)))............................................(((((.(..((((((((((.(((......)))))))))))))..).))))). ( -22.00) >DroSec_CAF1 82849 110 + 1 CCAUGGCU--------CCGGCCUCAUAAUUCCCUCCUCUUUCCACCUCUCCCCUUUCCAUCGUUCAGGCGUUUUUAAUGAUGCGUCAGAAUAUUGUUUACGCAUCAUUUUACAUGUCG ....(((.--------...)))............................................(((((.(..((((((((((.(((......)))))))))))))..).))))). ( -22.00) >DroSim_CAF1 83584 110 + 1 CCAUGGCU--------CCGGCCUCAUAAUUCCCUCCCCUUUCCUCCUCUCCCCUUUCCAUCGUUCAGGCGUUUUUAAUGAUGCGUCAGAAUAUUGUUUACGCAUCAUUUUACAUGUCG ....(((.--------...)))............................................(((((.(..((((((((((.(((......)))))))))))))..).))))). ( -22.00) >DroEre_CAF1 79643 103 + 1 CCAUGGCUCCAUGGCUCCGGCCUUAUAAUUCC---------------CUCCCCUGCUCAUCGUCCAGGCGUUUUUAAUGAUGCGUCAGAAUAUUGUUUACGCAUCAUUUUACAUGUCG (((((....)))))...((((...........---------------....((((.........)))).((....((((((((((.(((......)))))))))))))..))..)))) ( -24.90) >DroYak_CAF1 68289 110 + 1 CCAUGGCUCCAUGACUACGGCCUCAUAAUUCCA--------CCACUCCCCCCCUCCUCGUCGUCCAGGCGUUUUUAAUGAUGCGUCAGAAUAUUGUUUACGCAUCAUUUUACAUGUCG .((((....))))...(((((............--------.................)))))...(((((.(..((((((((((.(((......)))))))))))))..).))))). ( -23.55) >DroPer_CAF1 88688 85 + 1 CCG-----------------CCUCCUGCUUCC----------CUGGA------UGCGCCUCGUUCAGGCGUUUUUAAUGAUGCGUCAGAAUAUUGUUUACGCAUCAUUUUACAUGUCG .((-----------------(.(((.......----------..)))------.))).........(((((.(..((((((((((.(((......)))))))))))))..).))))). ( -24.60) >consensus CCAUGGCU________CCGGCCUCAUAAUUCCC________CCUCCUCUCCCCUUCCCAUCGUUCAGGCGUUUUUAAUGAUGCGUCAGAAUAUUGUUUACGCAUCAUUUUACAUGUCG ....((((..........))))............................................(((((.(..((((((((((.(((......)))))))))))))..).))))). (-19.27 = -19.68 + 0.42)
| Location | 5,791,094 – 5,791,187 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 82.88 |
| Mean single sequence MFE | -25.80 |
| Consensus MFE | -18.99 |
| Energy contribution | -18.63 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.761789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5791094 93 + 27905053 UCCUCCUCUCCCCUUUCCAU--CGUUCAGGCGUUUUUAAUGAUGCGUCAGAAUAUUGUUUACGCAUCAUUUUACAUGUCGGCAAAUGGGAAUGGG .........(((.(((((((--......(((((.(..((((((((((.(((......)))))))))))))..).))))).....))))))).))) ( -29.10) >DroPse_CAF1 89187 85 + 1 --CUGGA------UGCGCCU--CGUUCAGGCGUUUUUAAUGAUGCGUCAGAAUAUUGUUUACGCAUCAUUUUACAUGUCGGCAAAUGGGAAUGGG --(((..------(((((((--.....))))((....((((((((((.(((......)))))))))))))..))......)))..)))....... ( -22.70) >DroEre_CAF1 79675 86 + 1 -------CUCCCCUGCUCAU--CGUCCAGGCGUUUUUAAUGAUGCGUCAGAAUAUUGUUUACGCAUCAUUUUACAUGUCGGCAAAUGGGAAUGGG -------...(((..(((((--...((.(((((.(..((((((((((.(((......)))))))))))))..).)))))))...)))))...))) ( -28.40) >DroWil_CAF1 118325 92 + 1 -UCUCCUCCACAAUUUGCCU--CGUUCAGGCGUUUUUAAUGAUGCGUCAGAAUAUUGUUUACGCAUCAUUUUACAUGUCGGCAAACGGCUACAGA -...............((((--.....))))((....((((((((((.(((......)))))))))))))..))..((((.....))))...... ( -22.60) >DroAna_CAF1 35276 93 + 1 CCCUCCACCCCCCA--CCAUCUAGCCCGGGCGUUUUUAAUGAUGCGUCAGAAUAUUGUUUACGCAUCAUUUUACAUGUCGGCAAAUGGGCAUGGG .......(((....--((((...(((..(((((.(..((((((((((.(((......)))))))))))))..).))))))))..))))....))) ( -29.30) >DroPer_CAF1 88703 85 + 1 --CUGGA------UGCGCCU--CGUUCAGGCGUUUUUAAUGAUGCGUCAGAAUAUUGUUUACGCAUCAUUUUACAUGUCGGCAAAUGGGAAUGGG --(((..------(((((((--.....))))((....((((((((((.(((......)))))))))))))..))......)))..)))....... ( -22.70) >consensus __CUCCAC_CCCCUGCGCAU__CGUUCAGGCGUUUUUAAUGAUGCGUCAGAAUAUUGUUUACGCAUCAUUUUACAUGUCGGCAAAUGGGAAUGGG .......................(((..(((((.(..((((((((((.(((......)))))))))))))..).))))))))............. (-18.99 = -18.63 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:56 2006