| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,788,138 – 5,788,230 |
| Length | 92 |
| Max. P | 0.728862 |
| Location | 5,788,138 – 5,788,230 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 78.46 |
| Mean single sequence MFE | -19.88 |
| Consensus MFE | -7.74 |
| Energy contribution | -8.47 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728862 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5788138 92 - 27905053 CCAGCGAAACUCUCGCAUAUGUGGCCG--UGCAUAUAUGCAUA------UAUGUAUAACUUUUGUUUAUCUUAUGAAAGUUUCUUUUCAUAGUUUUGGCC ...((((.....))))......(((((--((((((((....))------)))))))..............(((((((((....)))))))))....)))) ( -23.90) >DroSec_CAF1 79951 80 - 1 CCAG--CAACUCUCGCAUAU----------------AUGCAUAUAC--AUAUGUAUAACUUUUGUUUAUCUUAUGAAAGUUUCUUUUCAUGGUUUUGGCC ((((--.(((.........(----------------(((((((...--.))))))))..............((((((((....))))))))))))))).. ( -13.50) >DroSim_CAF1 80680 78 - 1 CCAGGCCAACUCUCGCAUAU----------------AUGCAUA------UAUGUAUAACUUUUGUUUAUCUUAUGAAAGUUUCUUUUCAUGGUUUUGGCC ...((((((..((.((((((----------------(....))------)))))..((((((..(.......)..)))))).........))..)))))) ( -18.50) >DroEre_CAF1 76619 96 - 1 CCAG--CAACUCUCGCAUAUGUGGCCA--UGCAUAUAUGCAUAUACUCGUAUGUAUAACUUUUGUUUAUCUUAUGAAAGUUUCUUUUCAUGGUUUUGGCC ((((--.(((....(((((((((....--..))))))))).(((((......)))))..............((((((((....))))))))))))))).. ( -22.00) >DroYak_CAF1 65201 90 - 1 CCAG--CAACUCUGGCAUAUGUGGCUA--UGCAUUUAUGCAUAU------AUGUAUAACUUUUGUUUAUCUUAUGAAAGUUUCUUUUCAUGGUUUUGGCC ((((--.((((.(((((((((((.(..--.........))))))------))))..((((((..(.......)..))))))......)).)))))))).. ( -18.70) >DroAna_CAF1 32294 93 - 1 CCAC--AUACU----CAUAUGUGGCGACAUGCCC-CGUGCAUAUAUAUGCAUAUAUAACUUUUGUUUAUCUUAUGAAAGUUUCUCUUCAUGGCAUUUUCC ((((--(((..----..)))))))....(((((.-.((((((....))))))....((((((..(.......)..)))))).........)))))..... ( -22.70) >consensus CCAG__CAACUCUCGCAUAUGUGGC_A__UGCAU_UAUGCAUAU_____UAUGUAUAACUUUUGUUUAUCUUAUGAAAGUUUCUUUUCAUGGUUUUGGCC (((.................................((((((((....))))))))((((((..(.......)..))))))........)))........ ( -7.74 = -8.47 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:54 2006