Locus 2036

Sequence ID 3R_DroMel_CAF1
Location 5,777,977 – 5,778,075
Length 98
Max. P 0.866058
window3338

overview

Window 8

Location 5,777,977 – 5,778,075
Length 98
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 92.27
Mean single sequence MFE -30.25
Consensus MFE -25.73
Energy contribution -25.98
Covariance contribution 0.25
Combinations/Pair 1.03
Mean z-score -1.92
Structure conservation index 0.85
SVM decision value 0.85
SVM RNA-class probability 0.866058
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5777977 98 - 27905053
AAUGAGCUUUAAAAAUAUAAAUUAUGACCGCACUGCUUUUGCUGGCUUUCUGUGUGG-------UAUGCCUCAUGCACUCGCAGUCGUGAUUUAUGGUGAGCGAG
.....((((......(((((((((((((.((...((....))..))....((((.((-------((((...))))).).)))))))))))))))))..))))... ( -28.60)
>DroSec_CAF1 69985 98 - 1
AAUGAGCUUUAAAAAUAUAAAUUAUGACCGCACUGCUUUUGCUGGCUUUCUGUGUGG-------UAUGCCUCAUGCACUCGCAGUCGUGAUUUAUGGCGAGCGAG
.....((((......(((((((((((((.((...((....))..))....((((.((-------((((...))))).).)))))))))))))))))..))))... ( -27.90)
>DroEre_CAF1 65534 97 - 1
AAUGAGCUUUAAAAAUAUAAAUUAUGACCGCACAGCU-CUGCUGGCUUUCUAUGUGG-------UCUGCCUCAUGCACUCGCAGUCGUGAUUUAUGGCGAGCGAG
.....((((......(((((((((((((.((.((((.-..))))......((((.((-------....)).)))).....)).)))))))))))))..))))... ( -28.70)
>DroYak_CAF1 54662 104 - 1
AAUGAGCUUUAAAAAUAUAAAUUAUGACCGCACAGCU-CUGCUGGCUUUCUAUGCGGUGUGCGGUAUGCCUCAUGCACUCGCAGUCGUGAUUUAUGGUGAGCGAG
.....((((......(((((((((((((.((.((((.-..))))))......(((((.((((((....))....))))))))))))))))))))))..))))... ( -35.80)
>consensus
AAUGAGCUUUAAAAAUAUAAAUUAUGACCGCACAGCU_CUGCUGGCUUUCUAUGUGG_______UAUGCCUCAUGCACUCGCAGUCGUGAUUUAUGGCGAGCGAG
.....((((......(((((((((((((.((.((((....))))((.....(((.((...........)).)))))....)).)))))))))))))..))))... (-25.73 = -25.98 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:50 2006