Locus 2035

Sequence ID 3R_DroMel_CAF1
Location 5,776,961 – 5,777,066
Length 105
Max. P 0.712993
window3337

overview

Window 7

Location 5,776,961 – 5,777,066
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 87.90
Mean single sequence MFE -32.38
Consensus MFE -24.30
Energy contribution -25.46
Covariance contribution 1.16
Combinations/Pair 1.09
Mean z-score -1.78
Structure conservation index 0.75
SVM decision value 0.38
SVM RNA-class probability 0.712993
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5776961 105 - 27905053
CUCGCAUCGCCAUUCGCAGUUCGCUGUUCGCUGUUCGCUGUUCAGUGUGUAGUGAUGUAAGCAGAGCACUUGGCACAUCCAUUGUUUGCUGGGGUGCAUUUGUUU
...(((((((((......(((((((..((((((..((((....))))..))))))....))).))))...))))....(((........))))))))........ ( -33.40)
>DroSec_CAF1 69001 98 - 1
CUCGCAUCGCCAUUCGCAGUUCGGUGU-------UCGCUGUUCAGCGUGUAGUGAUGUAAGCAGAGCACUUGGCACAUCCAUUGUUUGCUGGGGUGCAUUUGUUU
...(((((((.((.(((.(..((((..-------..))))..).))).)).)))))))((((((((((((..(((((.....)))..))..).)))).))))))) ( -33.90)
>DroSim_CAF1 67703 98 - 1
CUCGCAUCGCCAUUCGCAGUUCGCUGU-------UCGCUGUUCAGCGUGUAGUGAUGUAAGCAGAGCACUUGGCACAUCCAUUGUUUGCUGGGGUGCAUUUGUUU
...(((((.((....(((..((((((.-------.((((....))))..))))))))).((((((.((..(((.....))).)))))))))))))))........ ( -32.00)
>DroEre_CAF1 64541 98 - 1
CUCGCAUCGCCAUUCGCAGUUCGCUGU-------GCGCUGCUCAGUGUAUAGUGAUGUAAGCAGAGCACUUGGCACAUCCAUUGUUUGCCGGGGUGCAUUUGUUU
...(((((((.....)).....(((((-------(((((....)))))))))))))))(((((((((((((((((((.....)))..))).)))))).))))))) ( -36.10)
>DroYak_CAF1 53610 86 - 1
CUC------------ACAGUUCGCUGU-------UCGGUGUAUAGUGUAUAGUGAUGUAAGCAGAGCACUUGGCACAUCCAUUGUUUGCCGGGGUGCAUUUGUUU
.((------------((.((.((((((-------.......)))))).)).))))...(((((((((((((((((((.....)))..))).)))))).))))))) ( -26.50)
>consensus
CUCGCAUCGCCAUUCGCAGUUCGCUGU_______UCGCUGUUCAGUGUGUAGUGAUGUAAGCAGAGCACUUGGCACAUCCAUUGUUUGCUGGGGUGCAUUUGUUU
...(((((((.....((((....))))........((((....))))....)))))))(((((((((((((((((((.....)))..))).)))))).))))))) (-24.30 = -25.46 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:49 2006