Locus 2034

Sequence ID 3R_DroMel_CAF1
Location 5,770,262 – 5,770,355
Length 93
Max. P 0.881097
window3336

overview

Window 6

Location 5,770,262 – 5,770,355
Length 93
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 79.78
Mean single sequence MFE -25.17
Consensus MFE -14.00
Energy contribution -14.56
Covariance contribution 0.56
Combinations/Pair 1.23
Mean z-score -2.43
Structure conservation index 0.56
SVM decision value 0.92
SVM RNA-class probability 0.881097
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5770262 93 + 27905053
C----GUGUGUUUGGCUAUUUCGUUUAGAGCUUUUAAGGGCUCUUAAUAGCAAACAAACAAAAACCUAAAAAACGAGCAGCCGGCAACGAC-----AGAAAU
.----((.((((((.(((((......(((((((....))))))).))))))))))).))....................(.((....)).)-----...... ( -21.80)
>DroPse_CAF1 68740 91 + 1
A----AUGUGUGCGUGUCUUUCGUUAGGAGCGUUUAAGGGCUCUUAACAGCAAACACACAAAA--CCUCAAAGCGAGCAACAACCAGCGAC-----AGCGAC
.----.((((((..((.((...(((((((((........)))))))))))))..))))))...--.......((..((........))...-----.))... ( -25.60)
>DroSec_CAF1 62507 93 + 1
C----GUGUGUUUGGCUAUUUCGUUUAGAGCUUUUAAGGGCUCUUAAUAGCGAACAAACAAAAAACCUAAAAACGAGCAGCCGGCAAUGGC-----AGAAAU
.----((.((((((.(((((......(((((((....))))))).))))))))))).))....................((((....))))-----...... ( -23.60)
>DroSim_CAF1 62688 93 + 1
C----GUGUGUUUGGCUAUUUCGUUUAGAGCUUUUAAGGGCUCUUAAUAGCGAACAAACAAAAAACCUAAAAACGAGCAGCCGGCAACGGC-----AGAAAC
.----((.((((((.(((((......(((((((....))))))).))))))))))).))....................((((....))))-----...... ( -28.60)
>DroYak_CAF1 46676 97 + 1
C----GUGUGUUUGGCUAUUUCGUUUAGAGCUUUUAAGGGCUCUUAAUAGCGAACAAACAAAAAC-CUAAAAACGAGCAGCCGGCAAAGGCAGCAGAAAAAC
.----((.((((((.(((((......(((((((....))))))).))))))))))).))......-..........((.(((......))).))........ ( -26.00)
>DroAna_CAF1 14089 86 + 1
CGUUUGUGUGUUUGGCUAUUUCGUUUAGAGCUUUUAAGGGCUCUUAACAGCAAACACACAAAACC-CUAAAAACGACCAGGUAGCAA---------------
..((((((((((((.((.....(((.(((((((....))))))).)))))))))))))))))(((-.............))).....--------------- ( -25.42)
>consensus
C____GUGUGUUUGGCUAUUUCGUUUAGAGCUUUUAAGGGCUCUUAAUAGCAAACAAACAAAAACCCUAAAAACGAGCAGCCGGCAACGGC_____AGAAAC
........((.((((((..((((((((((((((....)))))))..........................))))))).))))))))................ (-14.00 = -14.56 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:48 2006