Locus 2027

Sequence ID 3R_DroMel_CAF1
Location 5,748,057 – 5,748,165
Length 108
Max. P 0.998441
window3324

overview

Window 4

Location 5,748,057 – 5,748,165
Length 108
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 81.41
Mean single sequence MFE -35.03
Consensus MFE -22.62
Energy contribution -24.96
Covariance contribution 2.34
Combinations/Pair 1.12
Mean z-score -3.71
Structure conservation index 0.65
SVM decision value 3.10
SVM RNA-class probability 0.998441
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5748057 108 - 27905053
AACUCAU---ACGCCUCGUUGUCAUCUGCGGCCACGGGGCGUAUGAGCAACGCUGUGCCUGCAGCACUCUGCUCCGCUUUUCCAAUUCAAUCUUCCACUUGGAACAACUAU
..(((((---(((((((((.(((......))).))))))))))))))....(((((....)))))..............((((((.............))))))....... ( -38.92)
>DroSec_CAF1 39299 108 - 1
AACUUAU---ACGCCUCGUUGUCAUCUGCGGCCACGGGGCGUAUGGGUAACGCGGUGCCUGCAGCACUCUGCUCCGCUUUUCCAAUUCAAUCCUCCACUUGGAACUACUAU
.((((((---(((((((((.(((......))).)))))))))))))))...((((.....((((....)))).))))..((((((.............))))))....... ( -41.02)
>DroSim_CAF1 40401 108 - 1
AACUCAU---ACGCCUCGUUGUCAUCUGCGGCCACGGGGCGUAUGAGCAACGCUGUGCCUGCAGCACUCUGCUCCGCUUUUCCAAUUCAAUCUUCCACAUGGAACUACUAU
..(((((---(((((((((.(((......))).))))))))))))))....(((((....)))))...........................((((....))))....... ( -38.50)
>DroEre_CAF1 35239 82 - 1
AA-----------------------------CCACGGGGCGUAUGAGCAAUGCUGUGCCUGCAGCACUUUGCUCCGCUUUUCCAAAUCAAUCUUUCACUGGAUACUAUUAU
..-----------------------------....((((((...((((((((((((....))))))..))))))))))...))......((((......))))........ ( -22.20)
>DroYak_CAF1 23402 111 - 1
AACUCAUACUACGCCUCGUUGUCAUCUGUGGCCACGGGGCGUAUGAGCAACGCUGUGCUUGCAGCACUUUGCUCCGCUUUUCCCAUUCGAUCUUUCACUUGCAACUAUUAC
.........((((((((((.((((....)))).)))))))))).((((((.(((((....)))))...))))))..................................... ( -34.50)
>consensus
AACUCAU___ACGCCUCGUUGUCAUCUGCGGCCACGGGGCGUAUGAGCAACGCUGUGCCUGCAGCACUCUGCUCCGCUUUUCCAAUUCAAUCUUCCACUUGGAACUACUAU
..........(((((((((.(((......))).)))))))))..(((((..(((((....)))))....)))))..................((((....))))....... (-22.62 = -24.96 +   2.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:37 2006