| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,743,754 – 5,743,866 |
| Length | 112 |
| Max. P | 0.587252 |
| Location | 5,743,754 – 5,743,866 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 85.50 |
| Mean single sequence MFE | -36.28 |
| Consensus MFE | -26.53 |
| Energy contribution | -28.78 |
| Covariance contribution | 2.25 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.587252 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5743754 112 - 27905053 UUUUCCA--ACGCGUGGAAAUGUUAAUGGGGUCAUUUGCCCGACUCGUCGGCACAUCGAAGGCGAAAAAGGCUGCUUGAGAUGGCCUCAAGUGCAUUUAUUUAAAUUUCACGCU .......--..((((((((((((...((((((((((((((.((....))))))..((((.(((.......)))..))))))))))))))...)))).........)))))))). ( -36.00) >DroSec_CAF1 35080 112 - 1 UUUUCCA--AAGCGUGGAAAUGUUAAUGGGGUCAUUUGCCCGACUCGUCGGCACAUCGAAGGCGAAAAAGGCUGCUCGAGAUGGCCUCAAGUGCAUUUAUUUAAAUUUCACGCU .......--.(((((((((((((...((((((((((((((.((....))))))..((((.(((.......)))..))))))))))))))...)))).........))))))))) ( -38.50) >DroSim_CAF1 35761 112 - 1 UUUUCCA--ACGCGUGGAAAUGUUAAUGGGGUCAUUUGCCCGACUCGGCGGCACAUCGAAGGCGAAAAAGGCUGCUCGAGAUGGCCUCAAGUGCAUUUAUUUAAAUUUCACGCU .......--..((((((((((((...(((((((((........(((((((((...(((....))).....))))).)))))))))))))...)))).........)))))))). ( -37.80) >DroEre_CAF1 30869 111 - 1 UUUUCCU--ACGCGUGGAAAUGUUAAUGGGGUCAUUUGCCCGACUCGUCGGCACAUCGAAGGC-AAAAAGGCUGCUCGAGAUGGCCUCAAGUGCAUUUAUUUAAAUUUCACGCU .......--..((((((((((((...((((((((((((((.((....))))))..((((.(((-......)))..))))))))))))))...)))).........)))))))). ( -38.40) >DroYak_CAF1 18937 112 - 1 UUUUUCU--ACGCGUGGAAAUGUUAAUGGGGUCAUUUGCCCGACUCGUCGGCACAUCGAAGGCGAAAAAGGCUGCUCGAGAUGGCCUCAAGUGCAUUUAUUUAAAUUUCACGCU .......--..((((((((((((...((((((((((((((.((....))))))..((((.(((.......)))..))))))))))))))...)))).........)))))))). ( -38.10) >DroPer_CAF1 40496 91 - 1 UUUUCAUGUGUGCGUGGAAAUGUUAAUGGGGUCAUUUGCCUGCAGCGG-GGC-----AAAUGCAA---A--CGCCUCGA-----------AUGU-UUCUUUCAAAUUUCACGCU ...........((((((((........((((((((((((((......)-)))-----)))))...---.--.)))))((-----------(...-....)))...)))))))). ( -28.90) >consensus UUUUCCA__ACGCGUGGAAAUGUUAAUGGGGUCAUUUGCCCGACUCGUCGGCACAUCGAAGGCGAAAAAGGCUGCUCGAGAUGGCCUCAAGUGCAUUUAUUUAAAUUUCACGCU ...........((((((((((((...((((((((((((((.((....))))))..((((.(((.......)))..))))))))))))))...)))).........)))))))). (-26.53 = -28.78 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:33 2006