Locus 2024

Sequence ID 3R_DroMel_CAF1
Location 5,739,071 – 5,739,164
Length 93
Max. P 0.622509
window3319

overview

Window 9

Location 5,739,071 – 5,739,164
Length 93
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 82.76
Mean single sequence MFE -25.23
Consensus MFE -17.51
Energy contribution -18.15
Covariance contribution 0.64
Combinations/Pair 1.11
Mean z-score -1.81
Structure conservation index 0.69
SVM decision value 0.18
SVM RNA-class probability 0.622509
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5739071 93 + 27905053
---UCCCUGCACACUUGCAGUCGUGUUUAUUUAUUUGCCAACUCAUUUAAGCAAAUGACCAGGCCAAG-------ACAUCGGCCGUUCCGAUCGCGAUAAGUC---
---...(((((....)))))(((((.((..((((((((............))))))))...((((...-------.....)))).....)).)))))......--- ( -23.40)
>DroPse_CAF1 36307 94 + 1
CCACUGCUGC-----UGCAGCCACACACAUUUAUUUGCCAACUCAUUUAAGCAAAUGACCAGGCCAAG-------ACAUUGUCCGGCCGGAUCGCGAUAAGUCAGC
.....(((((-----(...((.........((((((((............))))))))((.((((..(-------((...))).))))))...))....)).)))) ( -23.30)
>DroSec_CAF1 30583 93 + 1
---UUGCUGCAUACUUGCAGCCGUGUUUAUUUAUUUGCCAACUCAUUUAAGCAAAUGACCAGGCCAAG-------ACAUCGGCCGUUCCGAUCGCGAUAAGUC---
---..((((((....))))))((((.((..((((((((............))))))))...((((...-------.....)))).....)).)))).......--- ( -26.30)
>DroSim_CAF1 31207 93 + 1
---UCGCUGCAUACUUGCAGCCGUGUUUAUUUAUUUGCCAACUCAUUUAAGCAAAUGACCAGGCCAAG-------ACAUCGGCCGUUCCGAUCGCGAUAAGUC---
---..((((((....))))))((((.((..((((((((............))))))))...((((...-------.....)))).....)).)))).......--- ( -26.60)
>DroEre_CAF1 26240 100 + 1
---UCGCUGCAUACUUGCAGCCGCGUUUACUUAUUUGCCAACUCAUUUAAGCAAAUGACCAGGCCAAGAGACAUCACAUCGCCCGUUGCGAUCGCGAUAAGUC---
---..((((((....))))))(((((((.(((....(((...((((((....))))))...))).))))))).....(((((.....))))).))).......--- ( -28.50)
>DroPer_CAF1 35912 94 + 1
CCACUGCUGC-----UGCAGCCACACACAUUUAUUUGCCAACUCAUUUAAGCAAAUGACCAGGCCAAG-------ACAUUGUCCGGCCGGAUCGCGAUAAGUCAGC
.....(((((-----(...((.........((((((((............))))))))((.((((..(-------((...))).))))))...))....)).)))) ( -23.30)
>consensus
___UCGCUGCAUACUUGCAGCCGCGUUUAUUUAUUUGCCAACUCAUUUAAGCAAAUGACCAGGCCAAG_______ACAUCGGCCGUUCCGAUCGCGAUAAGUC___
.....((((((....)))))).......(((((((.(((...((((((....))))))...))).............(((((.....)))))...))))))).... (-17.51 = -18.15 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:32 2006