Locus 2022

Sequence ID 3R_DroMel_CAF1
Location 5,737,167 – 5,737,263
Length 96
Max. P 0.987569
window3317

overview

Window 7

Location 5,737,167 – 5,737,263
Length 96
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 84.53
Mean single sequence MFE -21.44
Consensus MFE -15.08
Energy contribution -15.88
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -3.12
Structure conservation index 0.70
SVM decision value 2.08
SVM RNA-class probability 0.987569
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5737167 96 - 27905053
CAUGUUGCCUUGCUGAGCGUUGGAAGGAGA-AAAAAAAAACAUGGUAAUAAACAGGGAAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUU
((((((.((((.(........).))))...-.......))))))................(((((((((....).(((.......))).)))))))) ( -22.40)
>DroSec_CAF1 28745 95 - 1
CAUGUUGCCUUGCUGAGCGUUGGAAGGAG--AAAAAAUAACUUGGUAAUAAACAGGGAAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUU
.......((((.(........).))))..--.........((((........))))....(((((((((....).(((.......))).)))))))) ( -21.50)
>DroSim_CAF1 29344 97 - 1
CAUGUUGCCUUGCUGAGCGUUGGAAGGAGAGAAAAAAAAACAUGGUAAUAAACAGGGAAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUC
((((((.((((.(........).))))...........)))))).................((((((((....).(((.......))).))))))). ( -21.50)
>DroEre_CAF1 24326 82 - 1
CAUGUUGCGUUGCA--------------AA-AACAAAAAACAUGGUAAUAAACAGGGAAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUU
((((((...(((..--------------..-..)))..))))))................(((((((((....).(((.......))).)))))))) ( -20.00)
>DroYak_CAF1 12125 81 - 1
CACGUUGCCUUGCA--------------AA-AAGC-AAAACAUGGUUAUAAGCAGGGAAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUU
.......((((((.--------------..-.(((-........)))....))))))...(((((((((....).(((.......))).)))))))) ( -21.80)
>consensus
CAUGUUGCCUUGCUGAGCGUUGGAAGGAGA_AAAAAAAAACAUGGUAAUAAACAGGGAAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUU
..(((((((..................................)))))))..........(((((((((....).(((.......))).)))))))) (-15.08 = -15.88 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:30 2006