Locus 2014

Sequence ID 3R_DroMel_CAF1
Location 5,712,913 – 5,713,010
Length 97
Max. P 0.524071
window3300

overview

Window 0

Location 5,712,913 – 5,713,010
Length 97
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 82.35
Mean single sequence MFE -21.60
Consensus MFE -15.17
Energy contribution -15.07
Covariance contribution -0.11
Combinations/Pair 1.13
Mean z-score -1.62
Structure conservation index 0.70
SVM decision value -0.02
SVM RNA-class probability 0.524071
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5712913 97 - 27905053
AACCUGGGAAGCAACGCCGGCAACGCCGUAAACGAGACUCGAAUUGUUUCCCAGUCGAGUCAUUGUCUCAUAGUUAUUUAGGUAUUUAUAUAUAUUU-
.(((((((.(((.(((.((....)).)))..(((((((((((.(((.....)))))))))).))))......))).)))))))..............- ( -27.90)
>DroEre_CAF1 12519 89 - 1
AACCUGGGAAGCAC--CCGGCAACC---AAAACUCGACUCAAAUUGCUUCCCAGUCGAGUCAUUGUCUCAUAGUUAUUUGGUCAUUUACUUAU----U
...((((((((((.--..(....)(---.......)........))))))))))..((((...((.(.((........))).))...))))..----. ( -18.90)
>DroYak_CAF1 16864 92 - 1
AACCUGGGAAGCAC--CCGGCAACC---AA-ACGAGACUCAAAUCACUUCCCAGUCGAGUCAUUGUCUCAUAGUUAUUUGGGUAUUUAUUUAUUUUUU
...(((((.....)--)))).....---((-(..((((((((((.(((....((.(((....))).))...))).)))))))).))..)))....... ( -18.00)
>consensus
AACCUGGGAAGCAC__CCGGCAACC___AAAACGAGACUCAAAUUGCUUCCCAGUCGAGUCAUUGUCUCAUAGUUAUUUGGGUAUUUAUUUAU_UUUU
...(((((((((......(....)...........((......)))))))))))..(((.......)))............................. (-15.17 = -15.07 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:14 2006